Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005174`

染色体: Chr01 坐标: 69482550-69486027 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005174`
名称	SmilChr01G005174
描述	uncharacterized SmilChr01G005174
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69482550 - 69486027 / `-`

ID 对照

NCBI Gene ID	`LOC131005506`
GeneID	`131005506`
locus_tag	`-`
NCBI Name	`LOC131005506`
原始查询	`LOC131005506`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830034]; symbol=AT4G38790; hit=AT4G38790; species=arabidopsis; confidence=high
产物	ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830034]; symbol=AT4G38790; hit=AT4G38790; species=arabidopsis; confidence=high
Arabidopsis	`AT4G38790` (AT4G38790) ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830034] identity=85.8; qcov=0.985; evalue=2.16e-173; confidence=high
Rice	`Os09g0534200` (OsGL1B) - identity=84.6; qcov=1; evalue=4.24e-173; confidence=high
GO	GO:0006621 (protein retention in ER lumen); GO:0016020 (membrane); GO:0046923 (ER lumen protein retrieval receptor activity)
KEGG	-
Pfam	PF00810 (ER_lumen_recept)
InterPro	-
eggNOG	-
NR	GeneID:131005506

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057788499.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057788499.1`
3	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057788499.1`
4	Vesicle	囊泡	0.60000	`XP_057788499.1`
5	Endoplasmic reticulum-golgi intermediate compartment	Endoplasmic reticulum-golgi intermediate compartment	0.20000	`XP_057788499.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69483110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B94
`Chr1:69483558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr1:69483588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:69485624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B94
`Chr1:69485636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788499.1

272 aa

136

272

ER_lumen_recept

PF00810 ER_lumen_recept 72-214 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788499.1`	Pfam	`PF00810`	ER_lumen_recept	Repeat	72	214	5.2e-45	154.5	ER lumen protein retaining receptor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932516.1
AAATCACTTCACTTCACATCATAAATACGTAACTGCCTAGAAAATTACTAAAATAAATATAATCTCTCATCTCCATTCAATTTTCCTTGAAATAACAAATTCAACAAATAAACGCTCAAACGCAAAAGGGGAAAAGAAAAAAAAGAAAAAGAAAAGAAAAAATGGGAATGTTGAAAACTTGAAAGTCATGAATTGTTTGAAACCTAAAATCAAACTCTTCTGCATTAGAAATTAAAAATCCATTTATTCACCTCCAAAAT...

CDS

1 records

下载 CDS FASTA

LOC131005506
ATGAGGCCACCGAGGAGGCCGATCCAGTCCGTGGCGGCATGGGTGCGGCGGCAGCCGTCGAAGGTGAAGGCGTTCCTCGTCGTAATCACCGGCATGGCGGCGCTCGTTATCCTCCGCGCCATTGTGAACGATCACGATAATCTCTTTGTCGCTGCGGAAGCTGTCCACTCGGTCGGAATTTCCGTTCTTATTTATAAATTGATGAAGGAGAAGACTTGCGCTGGGCTTTCACTCAAATCCCAGGAGCTAACAGCAATCTT...

Protein

1 records

下载 Protein FASTA

XP_057788499.1
MRPPRRPIQSVAAWVRRQPSKVKAFLVVITGMAALVILRAIVNDHDNLFVAAEAVHSVGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTVLDLATLATTLWVIYMIRFKLKSSYMADKDNFMLYYVVGPCAVLALLIHPSTSHHLVNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYIESVFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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