当前解析结果
SmilChr01G005181| 统一新 Gene ID | SmilChr01G005181 |
|---|---|
| 名称 | SmilChr01G005181 |
| 描述 | repetitive proline-rich cell wall protein 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69533471 - 69535820 / + |
| NCBI Gene ID | LOC131005518 |
|---|---|
| GeneID | 131005518 |
| locus_tag | - |
| NCBI Name | LOC131005518 |
| 原始查询 | LOC131005518 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | repetitive proline-rich cell wall protein 1-like |
| 产物 | repetitive proline-rich cell wall protein 1-like |
| Arabidopsis | AT2G21140 (PRP2)proline-rich protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:816649] identity=40; qcov=0.76; evalue=3.14e-33; confidence=medium |
| Rice | Os10g0148100- identity=35.8; qcov=0.648; evalue=7.78e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005518 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.80000 | XP_057788510.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057788510.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788510.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788510.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788510.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69534643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr1:69534657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:69534686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr1:69534688 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A3 |
Chr1:69534688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:69534702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B63 |
Chr1:69534711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A21,B110,B82,C79 |
Chr1:69534726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B110,B82,C84 |
Chr1:69534762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B33,B94,C29 |
Chr1:69535081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B10,B91,C46,D6 |
Chr1:69535186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B4,B53,C27,C4 |
Chr1:69535272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,B4,B57 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。