当前解析结果
SmilChr01G005182| 统一新 Gene ID | SmilChr01G005182 |
|---|---|
| 名称 | SmilChr01G005182 |
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69536937 - 69538900 / + |
| NCBI Gene ID | LOC131005519 |
|---|---|
| GeneID | 131005519 |
| locus_tag | - |
| NCBI Name | LOC131005519 |
| 原始查询 | LOC131005519 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 3 |
| 产物 | pollen-specific leucine-rich repeat extensin-like protein 3 |
| Arabidopsis | AT2G21140 (PRP2)proline-rich protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:816649] identity=31.3; qcov=0.822; evalue=5.34e-16; confidence=low |
| Rice | Os10g0148100- identity=31.3; qcov=0.579; evalue=2.31e-08; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005519 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057788511.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057788511.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788511.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788511.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788511.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69537299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:69537319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C35 |
Chr1:69537328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,B131 |
Chr1:69537363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C38 |
Chr1:69537425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B36,C2,C32,C68 |
Chr1:69537804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:69537868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr1:69537895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B124,B35,C55,D10,D6 |
Chr1:69537923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr1:69538186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr1:69538403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr1:69538495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。