Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005184`

染色体: Chr01 坐标: 69544994-69549823 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005184`
名称	SmilChr01G005184
描述	uncharacterized SmilChr01G005184
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69544994 - 69549823 / `-`

ID 对照

NCBI Gene ID	`LOC131005521`
GeneID	`131005521`
locus_tag	`-`
NCBI Name	`LOC131005521`
原始查询	`LOC131005521`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Adenine nucleotide alpha hydrolases-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822052]; symbol=RSY3; hit=AT3G24560; species=arabidopsis; confidence=high
产物	Adenine nucleotide alpha hydrolases-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822052]; symbol=RSY3; hit=AT3G24560; species=arabidopsis; confidence=high
Arabidopsis	`AT3G24560` (RSY3) Adenine nucleotide alpha hydrolases-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822052] identity=59.8; qcov=0.64; evalue=2.12e-151; confidence=high
Rice	`Os02g0266500` - identity=53; qcov=0.226; evalue=6.65e-43; confidence=weak
GO	GO:0005524 (ATP binding); GO:0008033 (tRNA processing); GO:0016879 (ligase activity, forming carbon-nitrogen bonds)
KEGG	-
Pfam	PF01171 (ATP_bind_3)
InterPro	-
eggNOG	-
NR	GeneID:131005521

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788514.1`
2	Mitochondrion	线粒体	0.80000	`XP_057788518.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057788514.1`
4	Nucleus	细胞核	0.00000	`XP_057788518.1`
5	Chromosome	染色体	0.00000	`XP_057788518.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69545460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:69545474`	`TCA`	`T`	2bp_deletion	frameshift_variant	8	B23,B24,B27,B50,C2,C51,C77,C8
`Chr1:69545477`	`A`	`ACT`	2bp_insertion	frameshift_variant	8	B23,B24,B27,B50,C2,C51,C77,C8
`Chr1:69545493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:69545681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:69545688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr1:69545690`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:69545700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B3,B57,C49
`Chr1:69545702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:69545705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B3,B57,C49
`Chr1:69545785`	`CTA`	`C`	2bp_deletion	frameshift_variant	42	A11,A15,A16,A21,B101,B102,B103,B104,B119,B12,B123,B127,B131,B138,B25,B34,B47,B49,B50,B62,B64,B7,B82,B84,B86,B95,B97,C15,C22,C25,C29,C32,C34,C36,C50,C54,C56,C57,C58,C74,C79,C9
`Chr1:69545909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,B24,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788514.1

664 aa

332

664

ATP_bind_3

PF01171 ATP_bind_3 68-287 aa

XP_057788515.1

663 aa

332

663

ATP_bind_3

PF01171 ATP_bind_3 68-286 aa

XP_057788516.1

632 aa

316

632

ATP_bind_3

PF01171 ATP_bind_3 68-255 aa

XP_057788517.1

631 aa

316

631

ATP_bind_3

PF01171 ATP_bind_3 68-215 aa PF01171 ATP_bind_3 215-254 aa

XP_057788518.1

584 aa

292

584

ATP_bind_3

PF01171 ATP_bind_3 68-287 aa

XP_057788519.1

583 aa

292

583

ATP_bind_3

PF01171 ATP_bind_3 68-286 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788514.1`	Pfam	`PF01171`	ATP_bind_3	Domain	68	287	1e-56	192.3	PP-loop domain
`XP_057788515.1`	Pfam	`PF01171`	ATP_bind_3	Domain	68	286	6.7e-59	199.5	PP-loop domain
`XP_057788516.1`	Pfam	`PF01171`	ATP_bind_3	Domain	68	255	2.1e-46	158.6	PP-loop domain
`XP_057788517.1`	Pfam	`PF01171`	ATP_bind_3	Domain	68	215	1.5e-48	165.7	PP-loop domain
`XP_057788517.1`	Pfam	`PF01171`	ATP_bind_3	Domain	215	254	1.5e-48	165.7	PP-loop domain
`XP_057788518.1`	Pfam	`PF01171`	ATP_bind_3	Domain	68	287	8.2e-57	192.6	PP-loop domain
`XP_057788519.1`	Pfam	`PF01171`	ATP_bind_3	Domain	68	286	5.3e-59	199.8	PP-loop domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057932535.1
CTCGCTTTTATAAATAAAAAATAAAAAAAATTGTTGCCTCGCCGAGAAAATATTAACGTGTTTTTATATATATCAGAATTTAAAAGTGGATGTACATTCTAATTTTACTAGATATAGATTAGCTAGCAGCAATTTTTGGATTAATCCATGGCGGCTAGAGGCCTCCTCGCGCCCTTCCACTTTCACTACAAATTCACGGCGGCGCCGCCCGTTCCTACCTGCATTTCGTGGCTCCAAAAAACCTCCCTGCGGCGGCGGCG...

XM_057932536.1
TTTTATAAATAAAAAATAAAAAAAATTGTTGCCTCGCCGAGAAAATATTAACGTGTTTTTATATATATCAGAATTTAAAAGTGGATGTACATTCTAATTTTACTAGATATAGATTAGCTAGCAGCAATTTTTGGATTAATCCATGGCGGCTAGAGGCCTCCTCGCGCCCTTCCACTTTCACTACAAATTCACGGCGGCGCCGCCCGTTCCTACCTGCATTTCGTGGCTCCAAAAAACCTCCCTGCGGCGGCGGCGCCGCC...

CDS

6 records

下载 CDS FASTA

LOC131005521
ATGGCGGCTAGAGGCCTCCTCGCGCCCTTCCACTTTCACTACAAATTCACGGCGGCGCCGCCCGTTCCTACCTGCATTTCGTGGCTCCAAAAAACCTCCCTGCGGCGGCGGCGCCGCCATGCTCGCTTTTTCTGCAGCCACCGCCGGCCGCCAGAAACGGACATTTCCAGCTACCGACTTCAGTTTGCTCAGAAAATGGCGATGGCCGGTCTCAACCCCAATCACCGCATCGCAATTGCTGTGTCTGGCGGTCCTGATAG...

Protein

6 records

下载 Protein FASTA

XP_057788514.1
MAARGLLAPFHFHYKFTAAPPVPTCISWLQKTSLRRRRRHARFFCSHRRPPETDISSYRLQFAQKMAMAGLNPNHRIAIAVSGGPDSIALCVLTLEWKSGNSNAANKGRSKAIDGLLAIVVDHGLRTESAEEADLVRDRVLDMGIKCEVASCKWLDGKPKLGHLQEAARDKRWYETLQKICIDQHIGVLLVAHHADDQAELFILRLSRNSGVLGLAGMAFTSQRFSEFPDFSGKESKAHSVLLVRPLLEFSKEDMYNICR...

XP_057788515.1
MAARGLLAPFHFHYKFTAAPPVPTCISWLQKTSLRRRRRHARFFCSHRRPPETDISSYRLQFAQKMAMAGLNPNHRIAIAVSGGPDSIALCVLTLEWKSGNSNAANKGRSKAIDGLLAIVVDHGLRTESAEEADLVRDRVLDMGIKCEVASCKWLDGKPKLGHLQEAARDKRYETLQKICIDQHIGVLLVAHHADDQAELFILRLSRNSGVLGLAGMAFTSQRFSEFPDFSGKESKAHSVLLVRPLLEFSKEDMYNICRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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