Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005256`

染色体: Chr01 坐标: 70055593-70071573 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005256`
名称	SmilChr01G005256
描述	uncharacterized SmilChr01G005256
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70055593 - 70071573 / `+`

ID 对照

NCBI Gene ID	`LOC131005591`
GeneID	`131005591`
locus_tag	`-`
NCBI Name	`LOC131005591`
原始查询	`LOC131005591`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述	nucleoporin (DUF3414) [Source:NCBI gene (formerly Entrezgene);Acc:830031]; symbol=AT4G38760; hit=AT4G38760; species=arabidopsis; confidence=high
产物	nucleoporin (DUF3414) [Source:NCBI gene (formerly Entrezgene);Acc:830031]; symbol=AT4G38760; hit=AT4G38760; species=arabidopsis; confidence=high
Arabidopsis	`AT4G38760` (AT4G38760) nucleoporin (DUF3414) [Source:NCBI gene (formerly Entrezgene);Acc:830031] identity=45.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os10g0154600` - identity=35.4; qcov=0.399; evalue=1.61e-101; confidence=low
GO	GO:0006405 (RNA export from nucleus); GO:0006606 (protein import into nucleus); GO:0017056 (structural constituent of nuclear pore); GO:0044611 (nuclear pore inner ring)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131005591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788583.1`
2	Nucleus membrane	核膜	0.60000	`XP_057788583.1`
3	Chromosome	染色体	0.40000	`XP_057788583.1`
4	Nuclear pore complex	核孔复合体	0.20000	`XP_057788583.1`
5	Cytoplasm	细胞质	0.20000	`XP_057788584.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70056130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B2,C8,C82
`Chr1:70056394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr1:70056419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B5,B83,C18
`Chr1:70056433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C75
`Chr1:70057986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70058000`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B137,B5
`Chr1:70058231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70058412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:70058446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C26,C31
`Chr1:70060765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr1:70060868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr1:70060873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932600.1
CGAAGCTAACAACACACAAGCAAATTGAGCAAGTTGTGTTTCGGTTCCGTTAAGAATTAACGGCTTCTAAAACCCGCCCTAACCCCTTTTCTTCTTTCATCTCTTCACTTCGAAATTTCACAAGGCGCGCGCAGTATTTCAATTTCTAGGGTTTTCGAATTTCGATTATTCCGGCGTCGGAAATGGCGACAACCGCGCCTGCAACCACCGCCGCTCAGTCGTCCGACGCCGCAAAAACAGTCGACGCCTCACTGTGGTGG...

XM_057932601.1
GATGCTATTCGTGCTATATATCATGCCAAAGTGCAGCTGGTGCTCATTCTCATCCAGTCTTTAAACCTGGAAAGTCTCCTTCAGATGATCCACGATAACATTCCTTTCAGGGATCTATTTTATTTTCAGAGATTGAAGTTCAACAAATTGATTCAATGATCTCTAGCTTCAATGCTTTTGAGTCCAAAGAATTAGGCCCTCTGATCTTAGCATGGGCTTTGTTTCTTTGTCTCGTTTCTTCTCTGCCAGAAAAAGAGGAA...

CDS

2 records

下载 CDS FASTA

LOC131005591
ATGGCGACAACCGCGCCTGCAACCACCGCCGCTCAGTCGTCCGACGCCGCAAAAACAGTCGACGCCTCACTGTGGTGGGAGCCTTTCAGTGCACTTCTCACCGAGCTGGAAAACGCCTCCGTGTCATCCGAAACCCCCCAAAATCTGGACAGGAAGTTGAAGGACAATCACGCGTGGTTTTTGGAGACTGTTTCCCAATTCAAGTCATCCAATCAGAAATCGAGGGAAGCATTGGATTCACCACGTGTGAAAATTGGCAC...

LOC131005591
ATGATCTCTAGCTTCAATGCTTTTGAGTCCAAAGAATTAGGCCCTCTGATCTTAGCATGGGCTTTGTTTCTTTGTCTCGTTTCTTCTCTGCCAGAAAAAGAGGAAAATAATCTGCTGTTGGAGATAGATCACATTGGTTATGTTCGTCAAGCTATGGAGGCTTCATCTTTGGGATATTTTCTTGAAATTCTAGAAAGTGATACATTGAAATATTCAGATGGTCCTCTAGCTGGTTACCGAAGTGTTTTAAGAACGTTTGT...

Protein

2 records

下载 Protein FASTA

XP_057788583.1
MATTAPATTAAQSSDAAKTVDASLWWEPFSALLTELENASVSSETPQNLDRKLKDNHAWFLETVSQFKSSNQKSREALDSPRVKIGTHELSIQPKLKDAALKISSILCLDEVQSYIIAKRSLERHNATTDDLHPDTINLVMLEYYIERQCLLKCTRQILMHALYFETELEGGSVVLEEAKRLISGGLECKLLSTFEDLLSSKYPEQMDFDLYTLWAEETLIEDNLILDILFLVYYESFCSCDAECWKRLCALYEGIVTGS...

XP_057788584.1
MISSFNAFESKELGPLILAWALFLCLVSSLPEKEENNLLLEIDHIGYVRQAMEASSLGYFLEILESDTLKYSDGPLAGYRSVLRTFVSAFIASYEINVQFEDDNLKLILDILCKIYQGEEFLCDQFWDRDSFIDGPVRCLLYNLESEFPYRTIELLRLLSALSEGAWPSECVFNFLDKSTGVTTPFEIRNGSVVDAVSKIVETHSPLYVAGVEGLVVPGKSRGQVLRMLDENCALVRWEHTESGVLVLLLRLAKEFYMQT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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