当前解析结果
SmilChr01G005337| 统一新 Gene ID | SmilChr01G005337 |
|---|---|
| 名称 | SmilChr01G005337 |
| 描述 | probable N-acetyltransferase HLS1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 70602943 - 70604862 / + |
| NCBI Gene ID | LOC131005665 |
|---|---|
| GeneID | 131005665 |
| locus_tag | - |
| NCBI Name | LOC131005665 |
| 原始查询 | LOC131005665 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable N-acetyltransferase HLS1 |
| 产物 | probable N-acetyltransferase HLS1 |
| Arabidopsis | AT2G23060 (AT2G23060)Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816836] identity=67.1; qcov=1.02; evalue=0; confidence=high |
| Rice | Os03g0764000- identity=60.4; qcov=0.988; evalue=4.58e-167; confidence=high |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057788671.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057788671.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057788671.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057788671.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788671.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:70603361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr1:70603518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B78 |
Chr1:70603901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,D10 |
Chr1:70604075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B131,C24,C36 |
Chr1:70604101 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C86 |
Chr1:70604101 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C86 |
Chr1:70604114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,B41,B76,C17 |
Chr1:70604126 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | A23 |
Chr1:70604126 |
G |
GA |
1bp_insertion | CDS_variant | 1 | A23 |
Chr1:70604134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:70604204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:70604246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788671.1PF00583
Acetyltransf_1 79-171 aa
PF13508
Acetyltransf_7 95-172 aa
PF08445
FR47 114-174 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788671.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 79 | 171 | 1.2e-14 | 55.2 | Acetyltransferase (GNAT) family |
XP_057788671.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 95 | 172 | 6.9e-07 | 30.3 | Acetyltransferase (GNAT) domain |
XP_057788671.1 |
Pfam | PF08445 |
FR47 | Family | 114 | 174 | 1.8e-05 | 25.3 | FR47-like protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。