Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005338`

染色体: Chr01 坐标: 70613875-70617690 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005338`
名称	SmilChr01G005338
描述	BTB/POZ domain-containing protein NPY5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70613875 - 70617690 / `-`

ID 对照

NCBI Gene ID	`LOC131005666`
GeneID	`131005666`
locus_tag	`-`
NCBI Name	`LOC131005666`
原始查询	`LOC131005666`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ domain-containing protein NPY5-like
产物	BTB/POZ domain-containing protein NPY5-like
Arabidopsis	`AT2G14820` (NPY2) Phototropic-responsive NPH3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:815970] identity=55.1; qcov=0.956; evalue=0; confidence=high
Rice	`Os12g0583500` - identity=55; qcov=1.09; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00651 (BTB); PF03000 (NPH3)
InterPro	-
eggNOG	-
NR	GeneID:131005666

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057788672.1`
2	Cell membrane	细胞膜	0.40000	`XP_057788672.1`
3	Cytoplasm	细胞质	0.20000	`XP_057788672.1`
4	Cytosol	细胞质基质	0.20000	`XP_057788672.1`
5	Chromosome	染色体	0.00000	`XP_057788672.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70614170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,C47,C8,D11
`Chr1:70614243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70614252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr1:70614378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:70614468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C41,C75
`Chr1:70614585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr1:70614601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,B44
`Chr1:70614636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr1:70614715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr1:70614766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B46
`Chr1:70614826`	`CTA`	`C`	2bp_deletion	frameshift_variant	4	A11,B33,B68,C48
`Chr1:70614826`	`CTA`	`C`	2bp_deletion	CDS_variant	4	A11,B33,B68,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788672.1

592 aa

296

592

BTB

NPH3

PF00651 BTB 28-119 aa PF03000 NPH3 212-461 aa

XP_057788673.1

592 aa

296

592

BTB

NPH3

PF00651 BTB 28-119 aa PF03000 NPH3 212-461 aa

XP_057788674.1

592 aa

296

592

BTB

NPH3

PF00651 BTB 28-119 aa PF03000 NPH3 212-461 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788672.1`	Pfam	`PF00651`	BTB	Domain	28	119	3.3e-05	24.7	BTB/POZ domain
`XP_057788672.1`	Pfam	`PF03000`	NPH3	Family	212	461	1.1e-81	275.0	NPH3 family
`XP_057788673.1`	Pfam	`PF00651`	BTB	Domain	28	119	3.3e-05	24.7	BTB/POZ domain
`XP_057788673.1`	Pfam	`PF03000`	NPH3	Family	212	461	1.1e-81	275.0	NPH3 family
`XP_057788674.1`	Pfam	`PF00651`	BTB	Domain	28	119	3.3e-05	24.7	BTB/POZ domain
`XP_057788674.1`	Pfam	`PF03000`	NPH3	Family	212	461	1.1e-81	275.0	NPH3 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932691.1
GCCATTCATCCAAAATCCAAATAGTATATACATTACACTATACTAATTTACAACTTTGAAATTCAAGAACCTCACTTTACTGATGATTTATTAGTGAATGAAAAGAAAAGGGAAGTGGAAAAGGGAGAAGCTGATTTTTCAAAGAACCTGCAGCAGGCGATAGACGATGAAGTTTATGAAGCTCGGATCCAAGCCTGATCAGTTTCAGAATGATGGAGACAATATCAGATATGTAGCAACAGAGCTGGCGACTGATCTGA...

XM_057932689.1
GCCATTCATCCAAAATCCAAATAGTATATACATTACACTATACTAATTTACAACTTTGAAATTCAAGAACCTCACTTTACTGATGATTTATTAGTGAATGAAAAGAAAAGGGAAGTGGAAAAGGGAGAAGCTGATTTTTCAAAGGTAAAAAAAAAAAATATTGATAATTTTTGCATAAATATGTGGGAAAGGCGAATGGGAAAAGTTATAATGTGGGGAGGAGAGAAAGAGGCAGCAGTGGTGGGGGCGGTGGTGCTGAT...

CDS

3 records

下载 CDS FASTA

LOC131005666
ATGAAGTTTATGAAGCTCGGATCCAAGCCTGATCAGTTTCAGAATGATGGAGACAATATCAGATATGTAGCAACAGAGCTGGCGACTGATCTGATAATTAATGTTGGTGATATCAAGTTTTATCTCCACAAGTTTCCTCTTCTCTCGAAGAGTTCTCACCTTCAGAAGCTCGTCGGCAGCAGTACTGCAAACGACGAAAATGATGAGATTCGCATAGACGACATTCCCGGGGGAGCTACTGCATTCGAAGTGTGTGCCAA...

Protein

3 records

下载 Protein FASTA

XP_057788672.1
MKFMKLGSKPDQFQNDGDNIRYVATELATDLIINVGDIKFYLHKFPLLSKSSHLQKLVGSSTANDENDEIRIDDIPGGATAFEVCAKFCYGMVATLNAYNVVAARCASEYLEMYETVEKGNLIYKIDVFLSSSIFRSWKDSIIVLQTTRSHLPWSEELKIVSHCLDSIASKASIEPSKVDWSYTYNRKKLLSEKGHDPLWNGVRKQQTVPKDWWAEELCELQIDLYKRVISTVRAKGRISADVIGESLQAYLSRRLPGFS...

XP_057788673.1
MKFMKLGSKPDQFQNDGDNIRYVATELATDLIINVGDIKFYLHKFPLLSKSSHLQKLVGSSTANDENDEIRIDDIPGGATAFEVCAKFCYGMVATLNAYNVVAARCASEYLEMYETVEKGNLIYKIDVFLSSSIFRSWKDSIIVLQTTRSHLPWSEELKIVSHCLDSIASKASIEPSKVDWSYTYNRKKLLSEKGHDPLWNGVRKQQTVPKDWWAEELCELQIDLYKRVISTVRAKGRISADVIGESLQAYLSRRLPGFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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