Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005343`

染色体: Chr01 坐标: 70643676-70654226 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005343`
名称	SmilChr01G005343
描述	endoribonuclease Dicer homolog 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70643676 - 70654226 / `-`

ID 对照

NCBI Gene ID	`LOC131005671`
GeneID	`131005671`
locus_tag	`-`
NCBI Name	`LOC131005671`
原始查询	`LOC131005671`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	endoribonuclease Dicer homolog 2-like
产物	endoribonuclease Dicer homolog 2-like
Arabidopsis	`AT3G03300` (DCL2) dicer-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:821300] identity=51; qcov=0.999; evalue=0; confidence=high
Rice	`Os03g0583900` (OsDCL2a) - identity=42.8; qcov=1; evalue=0; confidence=medium
GO	GO:0003723 (RNA binding); GO:0004525 (ribonuclease III activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030422 (siRNA processing)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF00636 (Ribonuclease_3); PF02170 (PAZ); PF03368 (Dicer_dimer); PF04851 (ResIII); PF14622 (Ribonucleas_3_3)
InterPro	-
eggNOG	-
NR	GeneID:131005671

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788683.1`
2	Cytoplasm	细胞质	0.80000	`XP_057788683.1`
3	Cytosol	细胞质基质	0.80000	`XP_057788683.1`
4	Nucleoplasm	核质	0.20000	`XP_057788683.1`
5	Chromosome	染色体	0.00000	`XP_057788685.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70643915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,C27,C42,D6
`Chr1:70643980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:70643996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,B65,B76,C56
`Chr1:70644016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:70644027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr1:70644096`	`C`	`CAT`	2bp_insertion	frameshift_variant	5	A21,B115,B70,B91,C61
`Chr1:70644096`	`C`	`CAT`	2bp_insertion	CDS_variant	5	A21,B115,B70,B91,C61
`Chr1:70644099`	`AG`	`A`	1bp_deletion	frameshift_variant	5	A21,B115,B70,B91,C61
`Chr1:70644099`	`AG`	`A`	1bp_deletion	CDS_variant	5	A21,B115,B70,B91,C61
`Chr1:70644107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,C68,C85
`Chr1:70644188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,B91
`Chr1:70644414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788683.1

1389 aa

694

1389

ResIII

DEAD

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

PF04851 ResIII 19-187 aa PF00270 DEAD 20-187 aa PF00271 Helicase_C 366-484 aa PF03368 Dicer_dimer 555-634 aa PF02170 PAZ 822-949 aa PF00636 Ribonuclease_3 992-1106 aa PF14622 Ribonucleas_3_3 1159-1294 aa PF00636 Ribonuclease_3 1182-1291 aa

XP_057788684.1

1389 aa

694

1389

ResIII

DEAD

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

XP_057788685.1

1147 aa

574

1147

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

PF00271 Helicase_C 124-242 aa PF03368 Dicer_dimer 313-392 aa PF02170 PAZ 580-707 aa PF00636 Ribonuclease_3 750-864 aa PF14622 Ribonucleas_3_3 917-1052 aa PF00636 Ribonuclease_3 940-1049 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788683.1`	Pfam	`PF04851`	ResIII	Family	19	187	2.2e-14	54.4	Type III restriction enzyme, res subunit
`XP_057788683.1`	Pfam	`PF00270`	DEAD	Domain	20	187	2.3e-18	67.2	DEAD/DEAH box helicase
`XP_057788683.1`	Pfam	`PF00271`	Helicase_C	Domain	366	484	7.1e-16	59.1	Helicase conserved C-terminal domain
`XP_057788683.1`	Pfam	`PF03368`	Dicer_dimer	Domain	555	634	2.1e-15	57.2	Dicer dimerisation domain
`XP_057788683.1`	Pfam	`PF02170`	PAZ	Domain	822	949	1e-10	42.4	PAZ domain
`XP_057788683.1`	Pfam	`PF00636`	Ribonuclease_3	Family	992	1106	4.5e-41	140.5	Ribonuclease III domain
`XP_057788683.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1159	1294	3.5e-23	82.9	Ribonuclease-III-like
`XP_057788683.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1182	1291	4.5e-41	140.5	Ribonuclease III domain
`XP_057788684.1`	Pfam	`PF04851`	ResIII	Family	19	187	2.2e-14	54.4	Type III restriction enzyme, res subunit
`XP_057788684.1`	Pfam	`PF00270`	DEAD	Domain	20	187	2.3e-18	67.2	DEAD/DEAH box helicase
`XP_057788684.1`	Pfam	`PF00271`	Helicase_C	Domain	366	484	7.1e-16	59.1	Helicase conserved C-terminal domain
`XP_057788684.1`	Pfam	`PF03368`	Dicer_dimer	Domain	555	634	2.1e-15	57.2	Dicer dimerisation domain
`XP_057788684.1`	Pfam	`PF02170`	PAZ	Domain	822	949	1e-10	42.4	PAZ domain
`XP_057788684.1`	Pfam	`PF00636`	Ribonuclease_3	Family	992	1106	4.5e-41	140.5	Ribonuclease III domain
`XP_057788684.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1159	1294	3.5e-23	82.9	Ribonuclease-III-like
`XP_057788684.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1182	1291	4.5e-41	140.5	Ribonuclease III domain
`XP_057788685.1`	Pfam	`PF00271`	Helicase_C	Domain	124	242	7e-16	59.2	Helicase conserved C-terminal domain
`XP_057788685.1`	Pfam	`PF03368`	Dicer_dimer	Domain	313	392	1.6e-15	57.6	Dicer dimerisation domain
`XP_057788685.1`	Pfam	`PF02170`	PAZ	Domain	580	707	7.7e-11	42.7	PAZ domain
`XP_057788685.1`	Pfam	`PF00636`	Ribonuclease_3	Family	750	864	2.8e-41	141.2	Ribonuclease III domain
`XP_057788685.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	917	1052	1.8e-23	83.8	Ribonuclease-III-like
`XP_057788685.1`	Pfam	`PF00636`	Ribonuclease_3	Family	940	1049	2.8e-41	141.2	Ribonuclease III domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009095333.1
CAACTCTCTCTCTCTCTCTCTCTCTCACACACACACACATCAGTCATTACCGTTTCAAATATATTCAGAATTTGGGCCCATACTTTTTCGTCTTCTCTTGGACTGCAATCCTTCCTTCCTCTCGAAGTTTTGACTCTTCAGTTACATAAGTAATAGTCTGTTGTGGGGTCTATTCAGTGCGCCCGCCCGAACATTTTTCCGATCAAGTTTTTGCCTGTCTAGGTTTCAGTTTCATCCGAGGGAGGAGGAAGAGTGGGTTT...

XM_057932700.1
CAACTCTCTCTCTCTCTCTCTCTCTCACACACACACACATCAGTCATTACCGTTTCAAATATATTCAGAATTTGGGCCCATACTTTTTCGTCTTCTCTTGGACTGCAATCCTTCCTTCCTCTCGAAGTTTTGACTCTTCAGTTACATAAGTAATAGTCTGTTGTGGGGTCTATTCAGTGCGCCCGCCCGAACATTTTTCCGATCAAGTTTTTGCCTGTCTAGGTTTCAGTTTCATCCGAGGGAGGAGGAAGAGTGGGTTT...

CDS

3 records

下载 CDS FASTA

LOC131005671
ATGATTATGGATGAAGGAAACCAAAAACTTATGGCAGATCCTCTCTCATTCGCCAGGAGTTATCAGTTGGAAGCACTAGAGATGGCTCTCAAAGATAATACAATTGTTTTCTTTGAGACGGGCACTGGGAAGACCCTAATTGCAATAATGCTTCTTCGCAGCTATTCTCACCTTCTGAGAAAGCCGGCACCTTATATTGCTGTGTTTTTGGTCCCTACTGTTGTCCTAGTTACTCAACAATCTGAAGTTGTGGCCCTACA...

Protein

3 records

下载 Protein FASTA

XP_057788683.1
MIMDEGNQKLMADPLSFARSYQLEALEMALKDNTIVFFETGTGKTLIAIMLLRSYSHLLRKPAPYIAVFLVPTVVLVTQQSEVVALHTDLKVGKYYGEMGVDFWDEATWKREVNKYEVLVMTPQILLDALRHTFLRLDQIKVLIFDECHNARGKHQYACIMTEFYHRELASKSRQLPRVFGMTASPIKAKASSSAEAYWKQINELENLMHSKVFTCESDAILARYIPFSTPKLKEYSEKDNPMILETLEEDLQKLADKHV...

XP_057788684.1
MIMDEGNQKLMADPLSFARSYQLEALEMALKDNTIVFFETGTGKTLIAIMLLRSYSHLLRKPAPYIAVFLVPTVVLVTQQSEVVALHTDLKVGKYYGEMGVDFWDEATWKREVNKYEVLVMTPQILLDALRHTFLRLDQIKVLIFDECHNARGKHQYACIMTEFYHRELASKSRQLPRVFGMTASPIKAKASSSAEAYWKQINELENLMHSKVFTCESDAILARYIPFSTPKLKEYSEKDNPMILETLEEDLQKLADKHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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