Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005347`

染色体: Chr01 坐标: 70715872-70719901 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005347`
名称	SmilChr01G005347
描述	uncharacterized SmilChr01G005347
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70715872 - 70719901 / `-`

ID 对照

NCBI Gene ID	`LOC131005675`
GeneID	`131005675`
locus_tag	`-`
NCBI Name	`LOC131005675`
原始查询	`LOC131005675`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	flocculation protein [Source:NCBI gene (formerly Entrezgene);Acc:818582]; symbol=AT2G39950; hit=AT2G39950; species=arabidopsis; confidence=medium
产物	flocculation protein [Source:NCBI gene (formerly Entrezgene);Acc:818582]; symbol=AT2G39950; hit=AT2G39950; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G39950` (AT2G39950) flocculation protein [Source:NCBI gene (formerly Entrezgene);Acc:818582] identity=62; qcov=0.506; evalue=4.08e-90; confidence=medium
Rice	`Os07g0100500` - identity=38.6; qcov=0.449; evalue=1.24e-32; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131005675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057788689.1`
2	Cytoplasm	细胞质	0.60000	`XP_057788689.1`
3	Cytosol	细胞质基质	0.40000	`XP_057788689.1`
4	Chromosome	染色体	0.00000	`XP_057788689.1`
5	Centromere	着丝粒	0.00000	`XP_057788689.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70716126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B55,C20,C78
`Chr1:70716135`	`CCG`	`C`	2bp_deletion	frameshift_variant	4	B13,B55,C20,C78
`Chr1:70716135`	`CCG`	`C`	2bp_deletion	CDS_variant	4	B13,B55,C20,C78
`Chr1:70716151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B55,C20,C78
`Chr1:70716152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B55,C20,C78
`Chr1:70716187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:70716309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr1:70716410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B3
`Chr1:70716425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr1:70716426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:70716473`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C27
`Chr1:70716473`	`TG`	`T`	1bp_deletion	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932706.1
ATATTGAATCATAATTTTCATGTCCGCTTTCTGTAATTTCCATTTTCCACTACAAATATACATCCTAACGAACGTGAAATTTTCCTATTTTGCAGCGAATGCGGCTACCGGTCTGTGGAATTTATTTCAATTTTTTCCGAATATTCTCTCGACTGATTAGCTTTCACATCAACATTTTCCGAAGATTTAATTGATTAATCGAATTCGTACAGCCGGAGGCAACCATTAGGGTTTCCGTAATCTGATTTTAACGAAATTTG...

XM_057932707.1
CTTTCTGTAATTTCCATTTTCCACTACAAATATACATCCTAACGAACGTGAAATTTTCCTATTTTGCAGCGAATGCGGCTACCGGTCTGTGGAATTTATTTCAATTTTTTCCGAATATTCTCTCGACTGATTAGCTTTCACATCAACATTTTCCGAAGATTTAATTGATTAATCGAATTCGTACAGCCGGAGGCAACCATTAGGGTTTCCGTAATCTGATTTTAACGAAATTTGGGAGATAATTTGCCAAAGAAATGGTT...

CDS

2 records

下载 CDS FASTA

LOC131005675
ATGGTTAAATCAGGGGAACGCCCGTTCGCCGACGATCGGTGCATCGACGCGGCGGATCAAAACTCCGACATCGAGGATTCCGTCGACGCATCTTCGAGCGGTATTGAGACTCCTGCGACTGCTAATCCGTCATTCTCGCGGAGGTTAACGGATATATTTCTGGGGGACGGCGATGAAGATCTGTTGCTACAGAGGACCGATATCGGAGATGGCTTATTGCAGTGGCTTGGGGCTTTGGACATGCAGGTGATGGGGGCTTG...

Protein

2 records

下载 Protein FASTA

XP_057788689.1
MVKSGERPFADDRCIDAADQNSDIEDSVDASSSGIETPATANPSFSRRLTDIFLGDGDEDLLLQRTDIGDGLLQWLGALDMQVMGACRADERLKPLLKLNISGGDAEDRLLAQLCEHFEPSEVGLLARCLCAPLVSIRVGKINKQGTVLCPTSVRGNLCLTLLPTSDLRVSFNGDDGSVERLATLSSEAHCTSLEIEEISADNSGRSFLLRIADNMVFYFWCSEKSQYLGNEMLRKMNDLLIRKPSLAELTGISDGRLNS...

XP_057788690.1
MVKSGERPFADDRCIDAADQNSDIEDSVDASSSGIETPATANPSFSRRLTDIFLGDGDEDLLLQRTDIGDGLLQWLGALDMQVMGACRADERLKPLLKLNISGGDAEDRLLAQLCEHFEPSEVGLLARCLCAPLVSIRVGKINKQGTVLCPTSVRGNLCLTLLPTSDLRVSFNGDDGSVERLATLSSEAHCTSLEIEEISADNSGRSFLLRIADNMVFYFWCSEKSQYLGNEMLRKMNDLLIRKPSLAELTGISDGRLNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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