当前解析结果
SmilChr01G005376| 统一新 Gene ID | SmilChr01G005376 |
|---|---|
| 名称 | SmilChr01G005376 |
| 描述 | phosphoinositide phospholipase C 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 70980715 - 70985410 / - |
| NCBI Gene ID | LOC131005705 |
|---|---|
| GeneID | 131005705 |
| locus_tag | - |
| NCBI Name | LOC131005705 |
| 原始查询 | LOC131005705 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoinositide phospholipase C 2-like |
| 产物 | phosphoinositide phospholipase C 2-like |
| Arabidopsis | AT3G08510 (PLC2)phospholipase C 2 [Source:NCBI gene (formerly Entrezgene);Acc:819999] identity=68.3; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0289300 (OsPLC2)- identity=57.3; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004435 (phosphatidylinositol-4,5-bisphosphate phospholipase C activity); GO:0006629 (lipid metabolic process); GO:0048015 (phosphatidylinositol-mediated signaling) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00168 (C2); PF00387 (PI-PLC-Y); PF00388 (PI-PLC-X); PF09279 (EF-hand_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005705 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057788726.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057788726.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057788726.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788726.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788726.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:70981069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B46 |
Chr1:70981099 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B82 |
Chr1:70981099 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B82 |
Chr1:70981101 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | B82 |
Chr1:70981101 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | B82 |
Chr1:70982329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr1:70982868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,D7 |
Chr1:70982955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:70983218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:70983868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C65,D7 |
Chr1:70983979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:70985055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788726.1PF09279
EF-hand_like 27-98 aa
PF00388
PI-PLC-X 111-253 aa
PF00387
PI-PLC-Y 348-433 aa
PF00168
C2 457-558 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788726.1 |
Pfam | PF09279 |
EF-hand_like | Domain | 27 | 98 | 1.5e-05 | 26.1 | Phosphoinositide-specific phospholipase C, efhand-like |
XP_057788726.1 |
Pfam | PF00388 |
PI-PLC-X | Family | 111 | 253 | 2.5e-51 | 173.8 | Phosphatidylinositol-specific phospholipase C, X domain |
XP_057788726.1 |
Pfam | PF00387 |
PI-PLC-Y | Family | 348 | 433 | 5.6e-30 | 104.6 | Phosphatidylinositol-specific phospholipase C, Y domain |
XP_057788726.1 |
Pfam | PF00168 |
C2 | Domain | 457 | 558 | 5.1e-13 | 49.8 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。