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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005388

染色体: Chr01 坐标: 71175208-71178122 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005388
名称SmilChr01G005388
描述pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向71175208 - 71178122 / +

ID 对照

NCBI Gene IDLOC131005717
GeneID131005717
locus_tag-
NCBI NameLOC131005717
原始查询LOC131005717

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like
产物pentatricopeptide repeat-containing protein At1g62930%2C chloroplastic-like
ArabidopsisAT1G62930 (RPF3)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842594]
identity=36; qcov=0.975; evalue=1.05e-111; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.5; qcov=0.914; evalue=7.3e-82; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131005717

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057788748.1
2 Nucleus 细胞核 0.00000 XP_057788748.1
3 Chromosome 染色体 0.00000 XP_057788748.1
4 Centromere 着丝粒 0.00000 XP_057788748.1
5 Chromatin 染色质 0.00000 XP_057788748.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:71176243 C T EMS_canonical_SNV stop_gained 127 A1,A10,A13,A14,A16,A22,A23,A24,A25,A3,A5,A9,B10,B100,B102,B103,B108,B109,B11,B112,B114,B115,B117,B118,B122,B124,B125,B126,B13,B131,B132,B133,B134,B135,B137,B139,B14,B15,B16,B17,B2,B20,B21,B23,B25,B29,B30,B32,B34,B36,B38,B40,B42,B44,B45,B46,B47,B48,B50,B53,B54,B55,B56,B58,B59,B6,B60,B61,B62,B63,B65,B69,B70,B71,B79,B8,B80,B87,B88,B89,B9,B90,B91,B94,B96,C1,C11,C12,C14,C18,C19,C23,C26,C29,C30,C31,C33,C36,C37,C39,C41,C42,C45,C5,C51,C53,C56,C58,C59,C62,C63,C65,C69,C7,C70,C71,C72,C73,C78,C79,C80,C82,C87,C9,D2,D5,D9
Chr1:71176332 GC G 1bp_deletion frameshift_variant 1 B131
Chr1:71176332 GC G 1bp_deletion CDS_variant 1 B131
Chr1:71176335 G A EMS_canonical_SNV CDS_variant 1 B131
Chr1:71176396 C T EMS_canonical_SNV stop_gained 4 A10,A4,B46,B93
Chr1:71176396 C T EMS_canonical_SNV CDS_variant 4 A10,A4,B46,B93
Chr1:71176784 C T EMS_canonical_SNV CDS_variant 3 C47,C8,C82
Chr1:71176880 C T EMS_canonical_SNV CDS_variant 1 B104
Chr1:71176900 G A EMS_canonical_SNV CDS_variant 2 C14,C2
Chr1:71177015 AG A 1bp_deletion frameshift_variant 1 D10
Chr1:71177015 AG A 1bp_deletion CDS_variant 1 D10
Chr1:71177031 G A EMS_canonical_SNV CDS_variant 3 A6,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788748.1
556 aa
N
1
278
556
PPR_3
PPR
PPR
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13812 PPR_3 53-107 aa PF01535 PPR 69-97 aa PF01535 PPR 139-164 aa PF13041 PPR_2 171-220 aa PF23276 TPR_24 175-299 aa PF01535 PPR 178-201 aa PF13812 PPR_3 195-251 aa PF12854 PPR_1 204-234 aa PF13041 PPR_2 209-255 aa PF01535 PPR 210-239 aa PF12854 PPR_1 237-261 aa PF01535 PPR 244-266 aa PF13812 PPR_3 274-320 aa PF12854 PPR_1 278-304 aa PF01535 PPR 278-305 aa PF13041 PPR_2 278-323 aa PF12854 PPR_1 310-336 aa PF13041 PPR_2 310-359 aa PF01535 PPR 313-343 aa PF13812 PPR_3 336-391 aa PF12854 PPR_1 342-372 aa PF01535 PPR 349-377 aa PF23276 TPR_24 373-471 aa PF13041 PPR_2 382-429 aa PF01535 PPR 383-411 aa PF13812 PPR_3 403-460 aa PF12854 PPR_1 413-444 aa PF01535 PPR 419-448 aa PF13041 PPR_2 419-464 aa PF12854 PPR_1 446-476 aa PF13041 PPR_2 451-487 aa PF01535 PPR 453-483 aa PF13812 PPR_3 478-530 aa PF13041 PPR_2 486-528 aa PF01535 PPR 489-518 aa PF01535 PPR 523-553 aa
XP_057788749.1
556 aa
N
1
278
556
PPR_3
PPR
PPR
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13812 PPR_3 53-107 aa PF01535 PPR 69-97 aa PF01535 PPR 139-164 aa PF13041 PPR_2 171-220 aa PF23276 TPR_24 175-299 aa PF01535 PPR 178-201 aa PF13812 PPR_3 195-251 aa PF12854 PPR_1 204-234 aa PF13041 PPR_2 209-255 aa PF01535 PPR 210-239 aa PF12854 PPR_1 237-261 aa PF01535 PPR 244-266 aa PF13812 PPR_3 274-320 aa PF12854 PPR_1 278-304 aa PF01535 PPR 278-305 aa PF13041 PPR_2 278-323 aa PF12854 PPR_1 310-336 aa PF13041 PPR_2 310-359 aa PF01535 PPR 313-343 aa PF13812 PPR_3 336-391 aa PF12854 PPR_1 342-372 aa PF01535 PPR 349-377 aa PF23276 TPR_24 373-471 aa PF13041 PPR_2 382-429 aa PF01535 PPR 383-411 aa PF13812 PPR_3 403-460 aa PF12854 PPR_1 413-444 aa PF01535 PPR 419-448 aa PF13041 PPR_2 419-464 aa PF12854 PPR_1 446-476 aa PF13041 PPR_2 451-487 aa PF01535 PPR 453-483 aa PF13812 PPR_3 478-530 aa PF13041 PPR_2 486-528 aa PF01535 PPR 489-518 aa PF01535 PPR 523-553 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057788748.1 Pfam PF13812 PPR_3 Repeat 53 107 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788748.1 Pfam PF01535 PPR Repeat 69 97 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF01535 PPR Repeat 139 164 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 171 220 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF23276 TPR_24 Repeat 175 299 1.4e-24 87.3 Pentatricopeptide repeat-containing protein
XP_057788748.1 Pfam PF01535 PPR Repeat 178 201 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13812 PPR_3 Repeat 195 251 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 204 234 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 209 255 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF01535 PPR Repeat 210 239 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 237 261 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF01535 PPR Repeat 244 266 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13812 PPR_3 Repeat 274 320 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 278 304 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF01535 PPR Repeat 278 305 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 278 323 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 310 336 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 310 359 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF01535 PPR Repeat 313 343 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13812 PPR_3 Repeat 336 391 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 342 372 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF01535 PPR Repeat 349 377 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF23276 TPR_24 Repeat 373 471 1.4e-24 87.3 Pentatricopeptide repeat-containing protein
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 382 429 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF01535 PPR Repeat 383 411 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13812 PPR_3 Repeat 403 460 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 413 444 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF01535 PPR Repeat 419 448 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 419 464 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF12854 PPR_1 Repeat 446 476 3.2e-97 318.6 PPR repeat
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 451 487 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF01535 PPR Repeat 453 483 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF13812 PPR_3 Repeat 478 530 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788748.1 Pfam PF13041 PPR_2 Repeat 486 528 8e-112 366.0 PPR repeat family
XP_057788748.1 Pfam PF01535 PPR Repeat 489 518 9.1e-90 289.6 PPR repeat
XP_057788748.1 Pfam PF01535 PPR Repeat 523 553 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13812 PPR_3 Repeat 53 107 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788749.1 Pfam PF01535 PPR Repeat 69 97 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF01535 PPR Repeat 139 164 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 171 220 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF23276 TPR_24 Repeat 175 299 1.4e-24 87.3 Pentatricopeptide repeat-containing protein
XP_057788749.1 Pfam PF01535 PPR Repeat 178 201 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13812 PPR_3 Repeat 195 251 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 204 234 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 209 255 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF01535 PPR Repeat 210 239 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 237 261 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF01535 PPR Repeat 244 266 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13812 PPR_3 Repeat 274 320 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 278 304 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF01535 PPR Repeat 278 305 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 278 323 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 310 336 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 310 359 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF01535 PPR Repeat 313 343 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13812 PPR_3 Repeat 336 391 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 342 372 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF01535 PPR Repeat 349 377 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF23276 TPR_24 Repeat 373 471 1.4e-24 87.3 Pentatricopeptide repeat-containing protein
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 382 429 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF01535 PPR Repeat 383 411 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13812 PPR_3 Repeat 403 460 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 413 444 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF01535 PPR Repeat 419 448 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 419 464 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF12854 PPR_1 Repeat 446 476 3.2e-97 318.6 PPR repeat
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 451 487 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF01535 PPR Repeat 453 483 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF13812 PPR_3 Repeat 478 530 1.7e-51 172.9 Pentatricopeptide repeat domain
XP_057788749.1 Pfam PF13041 PPR_2 Repeat 486 528 8e-112 366.0 PPR repeat family
XP_057788749.1 Pfam PF01535 PPR Repeat 489 518 9.1e-90 289.6 PPR repeat
XP_057788749.1 Pfam PF01535 PPR Repeat 523 553 9.1e-90 289.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057932766.1
GGCGATAAGTAGAGGAGAAAGTAAAATTATAGTCATTGGTAAAAGTGTGAGCGGCGATTACATACATGCAAGAGTGGAGGCCCACTTTGAGAAAAATGCGGGCAATTTTGATGGGATAACACATTACAGATTCCATTCTTTTCTCCTAGCCCACATTCTCTGCTGACTTTTATTGAATCTTGAGAAATGGGGAGGGTGTTTGTGGTGAGTCTTGAAGGGAAGATCTACAGTTGCAAGTACTGTGGGACCCATCTTGCTCT...
XM_057932765.1
GAGAAAAATGCGGGCAATTTTGATGGGGTATGTATGAATGAGGCCGCATATTCACATTCATTCATTAATTTAGGTGTTGCCACAGTATTTCGATGAGTGTTCTACTCTAATCGTCTTCAATTTCAGATAACACATTACAGATTCCATTCTTTTCTCCTAGCCCACATTCTCTGCTGACTTTTATTGAATCTTGAGAAATGGGGAGGGTGTTTGTGGTGAGTCTTGAAGGGAAGATCTACAGTTGCAAGTACTGTGGGACC...

CDS

2 records

下载 CDS FASTA
LOC131005717
ATGATGCGAAAGATCCTTGATTCATCAATCCAACGGCTTCATAGAGGATTTGCGGCTAAATCCACAGCGTCCCGTGATCTCGATGGGGAAAAGATGCAATTTACACGCACACCCACGATTGATTTCAGCTGCATACGCTGCGCAGATGATGCCGTTCGTTTGTTTCGCGAAATGATTGCATTGTCGCCGCAGCCTTCCATCCCTGCATACAACAAGCTGTTGAGTATTACGGTCAAATTGGGGGAATACCGAGTTGCCTT...
LOC131005717
ATGATGCGAAAGATCCTTGATTCATCAATCCAACGGCTTCATAGAGGATTTGCGGCTAAATCCACAGCGTCCCGTGATCTCGATGGGGAAAAGATGCAATTTACACGCACACCCACGATTGATTTCAGCTGCATACGCTGCGCAGATGATGCCGTTCGTTTGTTTCGCGAAATGATTGCATTGTCGCCGCAGCCTTCCATCCCTGCATACAACAAGCTGTTGAGTATTACGGTCAAATTGGGGGAATACCGAGTTGCCTT...

Protein

2 records

下载 Protein FASTA
XP_057788748.1
MMRKILDSSIQRLHRGFAAKSTASRDLDGEKMQFTRTPTIDFSCIRCADDAVRLFREMIALSPQPSIPAYNKLLSITVKLGEYRVAFYMFDKMRRWGSQLNLCSMGIAINCCCVLHRVDLGFAILGSLFKLGCAPNLTIFSTLLKGLVLVGKIGEAEALFRKILAFKLCNPNDVMILTVMNGLCKNGQSRTARDLLQVMEKTSLKPNVKAYSAVVDGLCKNSNVDDAMLLVSEMIKKGVSPNIITYNSIIKGLCNLGRWD...
XP_057788749.1
MMRKILDSSIQRLHRGFAAKSTASRDLDGEKMQFTRTPTIDFSCIRCADDAVRLFREMIALSPQPSIPAYNKLLSITVKLGEYRVAFYMFDKMRRWGSQLNLCSMGIAINCCCVLHRVDLGFAILGSLFKLGCAPNLTIFSTLLKGLVLVGKIGEAEALFRKILAFKLCNPNDVMILTVMNGLCKNGQSRTARDLLQVMEKTSLKPNVKAYSAVVDGLCKNSNVDDAMLLVSEMIKKGVSPNIITYNSIIKGLCNLGRWD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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