Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005408`

染色体: Chr01 坐标: 71337295-71341005 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005408`
名称	SmilChr01G005408
描述	cysteine synthase, chloroplastic/chromoplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71337295 - 71341005 / `+`

ID 对照

NCBI Gene ID	`LOC131005737`
GeneID	`131005737`
locus_tag	`-`
NCBI Name	`LOC131005737`
原始查询	`LOC131005737`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine synthase, chloroplastic/chromoplastic-like
产物	cysteine synthase%2C chloroplastic/chromoplastic-like
Arabidopsis	`AT2G43750` (OASB) O-acetylserine (thiol) lyase B [Source:NCBI gene (formerly Entrezgene);Acc:818978] identity=76.4; qcov=1; evalue=1.16e-147; confidence=high
Rice	`Os01g0978100` - identity=76.8; qcov=1; evalue=9.86e-151; confidence=high
GO	GO:0004124 (cysteine synthase activity); GO:0005737 (cytoplasm); GO:0006535 (GO:0006535); GO:0009567 (double fertilization forming a zygote and endosperm); GO:0009860 (pollen tube growth)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage))
Pfam	PF00291 (PALP)
InterPro	-
eggNOG	-
NR	GeneID:131005737

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057788774.1`
2	Mitochondrion	线粒体	0.80000	`XP_057788773.1`
3	Cytoplasm	细胞质	0.80000	`XP_057788775.1`
4	Chloroplast	叶绿体	0.40000	`XP_057788773.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057788774.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71337518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr1:71338983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B12,D10
`Chr1:71339097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr1:71339576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,C58
`Chr1:71339806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B109,B15,B36
`Chr1:71340449`	`TGC`	`T`	2bp_deletion	frameshift_variant	7	A25,A4,B122,B127,B133,C1,C5
`Chr1:71340475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr1:71340483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788773.1

386 aa

193

386

PALP

PF00291 PALP 74-355 aa

XP_057788774.1

330 aa

165

330

PALP

PF00291 PALP 74-299 aa

XP_057788775.1

315 aa

158

315

PALP

PF00291 PALP 6-284 aa

XP_057788777.1

284 aa

142

284

PALP

PF00291 PALP 2-253 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788773.1`	Pfam	`PF00291`	PALP	Family	74	355	4.8e-72	243.5	Pyridoxal-phosphate dependent enzyme
`XP_057788774.1`	Pfam	`PF00291`	PALP	Family	74	299	6.3e-58	197.2	Pyridoxal-phosphate dependent enzyme
`XP_057788775.1`	Pfam	`PF00291`	PALP	Family	6	284	1.3e-71	242.1	Pyridoxal-phosphate dependent enzyme
`XP_057788777.1`	Pfam	`PF00291`	PALP	Family	2	253	6.7e-64	216.8	Pyridoxal-phosphate dependent enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057932790.1
GGGAAGAACAACACATTATCCGTTTGAACATTCACCAACTAACACGCAGTATGCACACAGTGAAGGTGTGAGAATTATTGACGAGAGAGACAATAAGAGATATCATATGTGAAGACACAAAAATCTCTATGCTTTCTAACACAAAATAGCACACAGTGGCATGACAATGGCGACGCTGGCGAAAATTCCGTTGATTTCTCTATATACCGCCGACAGGTCGGAGCTCTGCTTCTCCGCCGCTAGGCGATCTCTCGGAGCTA...

XM_057932792.1
AGAACAACACATTATCCGTTTGAACATTCACCAACTAACACGCAGTATGCACACAGTGAAGGTGTGAGAATTATTGACGAGAGAGACAATAAGAGATATCATATGTGAAGACACAAAAATCTCTATGCTTTCTAACACAAAATAGCACACAGTGGCATGACAATGGCGACGCTGGCGAAAATTCCGTTGATTTCTCTATATACCGCCGACAGGTCGGAGCTCTGCTTCTCCGCCGCTAGGCGATCTCTCGGAGCTAGCAC...

CDS

4 records

下载 CDS FASTA

LOC131005737
ATGACAATGGCGACGCTGGCGAAAATTCCGTTGATTTCTCTATATACCGCCGACAGGTCGGAGCTCTGCTTCTCCGCCGCTAGGCGATCTCTCGGAGCTAGCACGCTAGCTTGTGAGAATGCCGACAGAATCGGCTACGGTAGTAGGTGCGGGATTGTGTGTAAACCGGTGTCGATCGAGCCGCAACCGGCGATTGAAGGTCTCAACATTGCCAAAGATGTTAGCCAGCTTATTGGGAAGACACCAATGGTTTACTTGAA...

Protein

4 records

下载 Protein FASTA

XP_057788773.1
MTMATLAKIPLISLYTADRSELCFSAARRSLGASTLACENADRIGYGSRCGIVCKPVSIEPQPAIEGLNIAKDVSQLIGKTPMVYLNKIVKGCVANVSAKLEMMEPCRSVKDRIGYSMISDAEKRGLITPGKTVLVEATTGNTGIGLAFIAAFKGYKLILTMPTYVSLERKVILKAFGAEIVLTDAAKDVTGALEKAEEILNSTPDAYMLGQTDNPANPQIHYETTGPEIWEDTKGKVDILVAGVGTGGTISGTGRYLKK...

XP_057788774.1
MTMATLAKIPLISLYTADRSELCFSAARRSLGASTLACENADRIGYGSRCGIVCKPVSIEPQPAIEGLNIAKDVSQTVLVEATTGNTGIGLAFIAAFKGYKLILTMPTYVSLERKVILKAFGAEIVLTDAAKDVTGALEKAEEILNSTPDAYMLGQTDNPANPQIHYETTGPEIWEDTKGKVDILVAGVGTGGTISGTGRYLKKLNPNIKIIGVEPMESNVLSGGEPGPHKIQGIGPGFIPKNLDPQVVDEIIPITGDEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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