当前解析结果
SmilChr01G005420| 统一新 Gene ID | SmilChr01G005420 |
|---|---|
| 名称 | SmilChr01G005420 |
| 描述 | pentatricopeptide repeat-containing protein At1g60770 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71399457 - 71402127 / - |
| NCBI Gene ID | LOC131005746 |
|---|---|
| GeneID | 131005746 |
| locus_tag | - |
| NCBI Name | LOC131005746 |
| 原始查询 | LOC131005746 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g60770 |
| 产物 | pentatricopeptide repeat-containing protein At1g60770 |
| Arabidopsis | AT1G60770 (AT1G60770)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842371] identity=59.4; qcov=0.998; evalue=0; confidence=high |
| Rice | Os04g0320200 (OSJNBa0041M06.2)- identity=52.9; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005746 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057788785.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057788785.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057788785.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057788785.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057788785.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71399816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B75,C14 |
Chr1:71399869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B40,C1,C5 |
Chr1:71400131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr1:71400275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B65,C51,C60,D11 |
Chr1:71400279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:71400440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:71400497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B53,D2,D4,D7 |
Chr1:71400568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B108 |
Chr1:71400838 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B66,C51,C60 |
Chr1:71401735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:71401799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:71401942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C26,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788785.1PF01535
PPR 128-156 aa
PF23276
TPR_24 175-292 aa
PF13812
PPR_3 183-238 aa
PF01535
PPR 197-226 aa
PF01535
PPR 234-261 aa
PF01535
PPR 304-327 aa
PF01535
PPR 345-371 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788785.1 |
Pfam | PF01535 |
PPR | Repeat | 128 | 156 | 1.1e-31 | 107.5 | PPR repeat |
XP_057788785.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 175 | 292 | 3.9e-11 | 43.7 | Pentatricopeptide repeat-containing protein |
XP_057788785.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 183 | 238 | 5.4e-15 | 55.9 | Pentatricopeptide repeat domain |
XP_057788785.1 |
Pfam | PF01535 |
PPR | Repeat | 197 | 226 | 1.1e-31 | 107.5 | PPR repeat |
XP_057788785.1 |
Pfam | PF01535 |
PPR | Repeat | 234 | 261 | 1.1e-31 | 107.5 | PPR repeat |
XP_057788785.1 |
Pfam | PF01535 |
PPR | Repeat | 304 | 327 | 1.1e-31 | 107.5 | PPR repeat |
XP_057788785.1 |
Pfam | PF01535 |
PPR | Repeat | 345 | 371 | 1.1e-31 | 107.5 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。