当前解析结果
SmilChr01G005434| 统一新 Gene ID | SmilChr01G005434 |
|---|---|
| 名称 | SmilChr01G005434 |
| 描述 | uncharacterized SmilChr01G005434 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71484781 - 71486028 / - |
| NCBI Gene ID | LOC131005763 |
|---|---|
| GeneID | 131005763 |
| locus_tag | - |
| NCBI Name | LOC131005763 |
| 原始查询 | LOC131005763 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:842817]; symbol=AT1G65090; hit=AT1G65090; species=arabidopsis; confidence=low |
| 产物 | nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:842817]; symbol=AT1G65090; hit=AT1G65090; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G65090 (AT1G65090)nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:842817] identity=34.1; qcov=1.06; evalue=3.73e-34; confidence=low |
| Rice | Os12g0506700- identity=33.8; qcov=0.262; evalue=2.06e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005763 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057788811.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057788811.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057788814.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057788812.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788811.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71485080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr1:71485334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B23,B28,C18 |
Chr1:71485726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C34,C86 |
Chr1:71485734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B63,B66,B73 |
Chr1:71485760 |
TTC |
T |
2bp_deletion | frameshift_variant | 85 | A1,A10,A14,A2,A22,A3,A6,A7,A8,B10,B100,B101,B104,B107,B110,B111,B113,B119,B121,B124,B130,B132,B133,B138,B16,B17,B18,B19,B2,B24,B26,B28,B36,B37,B43,B44,B46,B47,B48,B51,B58,B61,B62,B63,B66,B70,B71,B73,B75,B8,B80,B82,B84,B85,B9,B90,B91,B93,B95,B98,B99,C10,C18,C22,C23,C3,C31,C34,C37,C42,C44,C52,C60,C61,C63,C64,C66,C71,C73,C74,C76,C81,C82,C86,D8 |
Chr1:71485782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C5,D5 |
Chr1:71485815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,C85 |
Chr1:71485845 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B23,B28,C18,C48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。