Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005434

染色体: Chr01 坐标: 71484781-71486028 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005434
名称SmilChr01G005434
描述uncharacterized SmilChr01G005434
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向71484781 - 71486028 / -

ID 对照

NCBI Gene IDLOC131005763
GeneID131005763
locus_tag-
NCBI NameLOC131005763
原始查询LOC131005763

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:842817]; symbol=AT1G65090; hit=AT1G65090; species=arabidopsis; confidence=low
产物nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:842817]; symbol=AT1G65090; hit=AT1G65090; species=arabidopsis; confidence=low
ArabidopsisAT1G65090 (AT1G65090)
nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:842817]
identity=34.1; qcov=1.06; evalue=3.73e-34; confidence=low
RiceOs12g0506700
-
identity=33.8; qcov=0.262; evalue=2.06e-07; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131005763

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057788811.1
2 Cell membrane 细胞膜 0.20000 XP_057788811.1
3 Nucleus membrane 核膜 0.20000 XP_057788814.1
4 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057788812.1
5 Nucleus 细胞核 0.00000 XP_057788811.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:71485080 G A EMS_canonical_SNV CDS_variant 1 C53
Chr1:71485334 G A EMS_canonical_SNV CDS_variant 4 A5,B23,B28,C18
Chr1:71485726 C T EMS_canonical_SNV CDS_variant 2 C34,C86
Chr1:71485734 C T EMS_canonical_SNV CDS_variant 3 B63,B66,B73
Chr1:71485760 TTC T 2bp_deletion frameshift_variant 85 A1,A10,A14,A2,A22,A3,A6,A7,A8,B10,B100,B101,B104,B107,B110,B111,B113,B119,B121,B124,B130,B132,B133,B138,B16,B17,B18,B19,B2,B24,B26,B28,B36,B37,B43,B44,B46,B47,B48,B51,B58,B61,B62,B63,B66,B70,B71,B73,B75,B8,B80,B82,B84,B85,B9,B90,B91,B93,B95,B98,B99,C10,C18,C22,C23,C3,C31,C34,C37,C42,C44,C52,C60,C61,C63,C64,C66,C71,C73,C74,C76,C81,C82,C86,D8
Chr1:71485782 C T EMS_canonical_SNV CDS_variant 2 C5,D5
Chr1:71485815 C T EMS_canonical_SNV CDS_variant 2 A11,C85
Chr1:71485845 C T EMS_canonical_SNV CDS_variant 5 A5,B23,B28,C18,C48

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057932831.1
GGCGCAGTGCAGATAAGATTTGGCTACTGCGGCGGTGTTGTATATATAATATAATAATATTATATATATGCATGCAAACTGTTGCGCCAACGCGTGTCACCGCTCTCATGAATTGAGTGCATCAATATACATGATGAAATCAGTAGTTTTTTGGTTAGGTGTGAGAATCGATTTTGAATGCGTGGGAGGAGGATGGAGAAGCAGGAGATTAGCGATGATGATGATTGGCGTATTGAAGAATATGAAGGGGAGAAGCAAGA...
XM_057932830.1
GGCGCAGTGCAGATAAGATTTGGCTACTGCGGCGGTGTTGTATATATAATATAATAATATTATATATATGCATGCAAACTGTTGCGCCAACGCGTGTCACCGCTCTCATGAATTGAGTGCATCAATATACATGATGAAATCAGTAGTTTTTTGGTTAGGTGTGAGAATCGATTTTGAATGCGTGGGAGGAGGATGGAGAAGCAGGAGATTAGCGATGATGATGATTGGCGTATTGAAGAATATGAAGGGGAGAAGCAAGA...

CDS

4 records

下载 CDS FASTA
LOC131005763
ATGCGTGGGAGGAGGATGGAGAAGCAGGAGATTAGCGATGATGATGATTGGCGTATTGAAGAATATGAAGGGGAGAAGCAAGAGGATTGGAATTGGATGATGGATGCAGCGAAGAAAGTGGTAATGGCGGGTATTGTGATCTCATCGGCTCCGCTGCTGCTTCCTCCCTTCCTCGTTGTCTCCGCCCTCGGTTTCGCTCTCTCGCTGCCCTCCGGCGTCGTTTTGGCCTCCTACGCCTGCACTCGCAAGCTCATGACCAA...
LOC131005763
ATGCGTGGGAGGAGGATGGAGAAGCAGGAGATTAGCGATGATGATGATTGGCGTATTGAAGAATATGAAGGGGAGAAGCAAGAGGATTGGAATTGGATGATGGATGCAGCGAAGAAAGTGGTAATGGCGGGTATTGTGATCTCATCGGCTCCGCTGCTGCTTCCTCCCTTCCTCGTTGTCTCCGCCCTCGGTTTCGCTCTCTCGCTGCCCTCCGGCGTCGTTTTGGCCTCCTACGCCTGCACTCGCAAGCTCATGACCAA...

Protein

4 records

下载 Protein FASTA
XP_057788811.1
MRGRRMEKQEISDDDDWRIEEYEGEKQEDWNWMMDAAKKVVMAGIVISSAPLLLPPFLVVSALGFALSLPSGVVLASYACTRKLMTKLLPPPQPLLLPYHDEEEEEEEEEEICYPPNYNGDDVEVGRERELEEEREMSSSSSSSEDENVIDVKEIQISSDLVLKNDDDDGKNAAGGVAEDEPKEGDQLKEEKVVLSVSLVAEDEPKEGDQLKEELKEEKEGSHGVNGGLHSHEELISEEKIWEKIDAIRVIVGFKAPRRS...
XP_057788812.1
MRGRRMEKQEISDDDDWRIEEYEGEKQEDWNWMMDAAKKVVMAGIVISSAPLLLPPFLVVSALGFALSLPSGVVLASYACTRKLMTKLLPPPQPLLLPYHDEEEEEEEEEEICYPPNYNGDDVEVGRERELEEEREMSSSSSSSEDENVIDVKEIQISSDLVLKNDDDDGKNAAGGEDEPKEGDQLKEEKVVLSVSLVAEDEPKEGDQLKEELKEEKEGSHGVNGGLHSHEELISEEKIWEKIDAIRVIVGFKAPRRSTY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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