Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005440`

染色体: Chr01 坐标: 71519011-71521445 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005440`
名称	SmilChr01G005440
描述	receptor-like protein CLAVATA2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71519011 - 71521445 / `-`

ID 对照

NCBI Gene ID	`LOC131005769`
GeneID	`131005769`
locus_tag	`-`
NCBI Name	`LOC131005769`
原始查询	`LOC131005769`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein CLAVATA2
产物	receptor-like protein CLAVATA2
Arabidopsis	`AT1G65380` (CLV2) Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:842849] identity=52.6; qcov=0.961; evalue=0; confidence=high
Rice	`Os02g0603100` (OJ1669_F01.20) - identity=48.1; qcov=0.704; evalue=3e-151; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131005769

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057788823.1`
2	Nucleus	细胞核	0.00000	`XP_057788823.1`
3	Chromosome	染色体	0.00000	`XP_057788823.1`
4	Centromere	着丝粒	0.00000	`XP_057788823.1`
5	Chromatin	染色质	0.00000	`XP_057788823.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71519154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C20
`Chr1:71519184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr1:71519187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B129,B49,B50,B55
`Chr1:71519188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:71519204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr1:71519209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:71519236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C20
`Chr1:71519269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B33,C53,C65
`Chr1:71519411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B131,B52,D4
`Chr1:71519689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:71519780`	`AG`	`A`	1bp_deletion	frameshift_variant	3	B112,B27,D3
`Chr1:71519780`	`AG`	`A`	1bp_deletion	CDS_variant	3	B112,B27,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788823.1

720 aa

360

720

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF00560 LRR_1 108-127 aa PF13855 LRR_8 108-164 aa PF00560 LRR_1 131-151 aa PF00560 LRR_1 156-177 aa PF00560 LRR_1 180-200 aa PF13516 LRR_6 203-217 aa PF00560 LRR_1 204-218 aa PF00560 LRR_1 249-270 aa PF00560 LRR_1 297-316 aa PF00560 LRR_1 348-370 aa PF00560 LRR_1 373-392 aa PF00560 LRR_1 397-417 aa PF00560 LRR_1 420-442 aa PF13855 LRR_8 420-479 aa PF00560 LRR_1 444-465 aa PF00560 LRR_1 468-488 aa PF13855 LRR_8 560-614 aa PF00560 LRR_1 581-601 aa PF00560 LRR_1 604-626 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	108	127	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF13855`	LRR_8	Repeat	108	164	4e-46	155.3	Leucine rich repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	131	151	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	156	177	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	180	200	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF13516`	LRR_6	Repeat	203	217	2.3e-10	40.4	Leucine Rich repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	204	218	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	249	270	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	297	316	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	348	370	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	373	392	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	397	417	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	420	442	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF13855`	LRR_8	Repeat	420	479	4e-46	155.3	Leucine rich repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	444	465	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	468	488	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF13855`	LRR_8	Repeat	560	614	4e-46	155.3	Leucine rich repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	581	601	9.1e-56	174.4	Leucine Rich Repeat
`XP_057788823.1`	Pfam	`PF00560`	LRR_1	Repeat	604	626	9.1e-56	174.4	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932840.1
CACAGACACACAGTATTCAAGAATTTGTACTGCGCTTTATTGTTGTGTGTGATATTATTATTTATTGTATTATTCCCTTTGGCTTTCCATCACTGACCTTTCCCTTTCCCCTTTCCCCTTTCCCACTCACTCCTCCACTTACCAACAACGAATGTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTCCCAGGTAAGTAAAACACTCCATAGCTACTGTCTTCCATGAAACTGAAGAAATGATAGAGAGAGGC...

CDS

1 records

下载 CDS FASTA

LOC131005769
ATGATAGAGAGAGGCAAGAGGGAAATCGAAATCGAATTCGAAATCAAAATAAAAATCCCAACTTTTTCCATCTTGCTATTGATACCCTTGTTGTTGTTGTTGTTATTATTACCTCGTGGGTTTTGCGTTTCTCTAAACCCACAAAGTGTGGGCATCGACCCACGAGATAAAGCTGCAATCTTGGAGCTCAAATCCCACTTTGAAGGCGGCGGCGATAATGGCTTCTCCATCTCCAACCGCTCCGGCCGGCTCACGGCGCT...

Protein

1 records

下载 Protein FASTA

XP_057788823.1
MIERGKREIEIEFEIKIKIPTFSILLLIPLLLLLLLLPRGFCVSLNPQSVGIDPRDKAAILELKSHFEGGGDNGFSISNRSGRLTALNLSALNLTGEIHSSLCNLSLLETLILSHNSLRGPIPSCFSLLRNLKVLDLSYNAFHGSAPQAVATLNQLAVLDLSHNVYSGEIPAWIGNFSSKLERLNLGFNNFSGEMPASLYSAMSLLYLDLSHNNLTGVVGDFRQALVQLSLDSNSFSGTLPCFLPAAESLSVLNLARNSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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