Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005457`

染色体: Chr01 坐标: 71600162-71603097 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005457`
名称	SmilChr01G005457
描述	uncharacterized SmilChr01G005457
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71600162 - 71603097 / `-`

ID 对照

NCBI Gene ID	`LOC131005783`
GeneID	`131005783`
locus_tag	`-`
NCBI Name	`LOC131005783`
原始查询	`LOC131005783`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Zinc-finger domain of monoamine-oxidase A repressor R1 [Source:NCBI gene (formerly Entrezgene);Acc:829865]; symbol=AT4G37110; hit=AT4G37110; species=arabidopsis; confidence=medium
产物	Zinc-finger domain of monoamine-oxidase A repressor R1 [Source:NCBI gene (formerly Entrezgene);Acc:829865]; symbol=AT4G37110; hit=AT4G37110; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G37110` (AT4G37110) Zinc-finger domain of monoamine-oxidase A repressor R1 [Source:NCBI gene (formerly Entrezgene);Acc:829865] identity=41.4; qcov=1.07; evalue=2.57e-53; confidence=medium
Rice	`Os11g0568300` - identity=44; qcov=0.809; evalue=1.59e-43; confidence=medium
GO	GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF10497 (zf-4CXXC_R1)
InterPro	-
eggNOG	-
NR	GeneID:131005783

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788849.1`
2	Chromosome	染色体	0.00000	`XP_057788849.1`
3	Centromere	着丝粒	0.00000	`XP_057788849.1`
4	Chromatin	染色质	0.00000	`XP_057788849.1`
5	Telomere	端粒	0.00000	`XP_057788849.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71601382`	`A`	`AG`	1bp_insertion	frameshift_variant	13	A5,B138,B19,B20,B40,B95,C17,C35,C36,C37,C51,C64,C66
`Chr1:71601441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B128,C10,C48
`Chr1:71601457`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C5
`Chr1:71601457`	`CA`	`C`	1bp_deletion	CDS_variant	1	C5
`Chr1:71601471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B28,C18
`Chr1:71601475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:71601613`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C20
`Chr1:71601613`	`CT`	`C`	1bp_deletion	CDS_variant	1	C20
`Chr1:71601684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C43,C64
`Chr1:71601696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B47,C43,C64,C75
`Chr1:71601697`	`G`	`A`	EMS_canonical_SNV	stop_gained	16	A7,A8,B100,B112,B113,B121,B140,B22,B53,B66,B99,C11,C37,C69,D2,D7
`Chr1:71601705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B47,C43,C64,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788849.1

269 aa

134

269

zf-4CXXC_R1

PF10497 zf-4CXXC_R1 125-221 aa

XP_057788850.1

267 aa

134

267

zf-4CXXC_R1

PF10497 zf-4CXXC_R1 125-219 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788849.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	125	221	4.5e-32	110.9	Zinc-finger domain of monoamine-oxidase A repressor R1
`XP_057788850.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	125	219	1.1e-29	103.3	Zinc-finger domain of monoamine-oxidase A repressor R1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932867.1
ATTAACTGAAATGAAACGACATAAATCCAAGACAGACAAATAATATCTGCCGCTTCTTCTTCTTCATTTCTCACTGCGGTGATTTTCTTTACTCAACTCTGTTTCTTCTTCATCACAAATCATATGCCAAAAGCTCAACAGCTAACAGCAGATATAGAGAGATGGCGAGTAGGAGAGGCACAGGCGAAGAAGAAATCGGAGTTAAGGGAGGAGGAGAGTATGAAGAATCCAGAGCACAAAGAATCAAGGAAAACATGGCG...

XM_057932866.1
ATTAACTGAAATGAAACGACATAAATCCAAGACAGACAAATAATATCTGCCGCTTCTTCTTCTTCATTTCTCACTGCGGTGATTTTCTTTACTCAACTCTGTTTCTTCTTCATCACAAATCATATGCCAAAAGCTCAACAGCTAACAGCAGATATAGAGAGATGGCGAGTAGGAGAGGCACAGGCGAAGAAGAAATCGGAGTTAAGGGAGGAGGAGAGTATGAAGAATCCAGAGCACAAAGAATCAAGGAAAACATGGCG...

CDS

2 records

下载 CDS FASTA

LOC131005783
ATGGCGAGTAGGAGAGGCACAGGCGAAGAAGAAATCGGAGTTAAGGGAGGAGGAGAGTATGAAGAATCCAGAGCACAAAGAATCAAGGAAAACATGGCGAGAATGAAGAGCCTGGGTATCGCTGCCCTTTCCAACCAGCTCCTCAAGAGTCGCCGCAAAAACAAGCGCCGCGTACCTTCGGATGATCCTCCCCGCCGCTCTTCTAGGTTGAATCCTACAGAGGAGCACAAATTGGGTGAGAATCCTGAGATTTACACAGA...

Protein

2 records

下载 Protein FASTA

XP_057788849.1
MASRRGTGEEEIGVKGGGEYEESRAQRIKENMARMKSLGIAALSNQLLKSRRKNKRRVPSDDPPRRSSRLNPTEEHKLGENPEIYTEKHKLGENPEIDENPEIYTEEHEKLLGDAVAEWTRQVKYDPSQGKPCHQCKKRPIGLVTTCSKCYTASGQLCGVCLYRRYGENLAEVSLKRDWVCPVCRGICNCSHCRRYKGWNPVEIDFKKAQKLGFKSVAHYLIHTRRGGAIDDAKTPSGDENDGPSDDSGDEHDEDYEKRY...

XP_057788850.1
MASRRGTGEEEIGVKGGGEYEESRAQRIKENMARMKSLGIAALSNQLLKSRRKNKRRVPSDDPPRRSSRLNPTEEHKLGENPEIYTEKHKLGENPEIDENPEIYTEEHEKLLGDAVAEWTRQVKYDPSQGKPCHQCKPIGLVTTCSKCYTASGQLCGVCLYRRYGENLAEVSLKRDWVCPVCRGICNCSHCRRYKGWNPVEIDFKKAQKLGFKSVAHYLIHTRRGGAIDDAKTPSGDENDGPSDDSGDEHDEDYEKRYGW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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