当前解析结果
SmilChr01G005443| 统一新 Gene ID | SmilChr01G005443 |
|---|---|
| 名称 | SmilChr01G005443 |
| 描述 | uncharacterized SmilChr01G005443 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71528110 - 71529022 / + |
| NCBI Gene ID | LOC131005787 |
|---|---|
| GeneID | 131005787 |
| locus_tag | - |
| NCBI Name | LOC131005787 |
| 原始查询 | LOC131005787 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GRIP/coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:820666]; symbol=AT3G14430; hit=AT3G14430; species=arabidopsis; confidence=medium |
| 产物 | GRIP/coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:820666]; symbol=AT3G14430; hit=AT3G14430; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G14430 (AT3G14430)GRIP/coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:820666] identity=74.1; qcov=0.667; evalue=2.38e-24; confidence=medium |
| Rice | Os08g0528601- identity=71.2; qcov=0.678; evalue=6.06e-23; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005787 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057788854.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057788854.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057788854.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788854.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788854.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71528485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,A3,B61 |
Chr1:71528560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B16 |
Chr1:71528592 |
TC |
* |
1bp_deletion | CDS_variant | 5 | B128,B16,B23,B34,B93 |
Chr1:71528620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:71528621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B14,B34,B93,C4 |
Chr1:71528626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B34,B93,C4 |
Chr1:71528629 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | B128,B34,B93,C4 |
Chr1:71528629 |
CA |
C |
1bp_deletion | CDS_variant | 4 | B128,B34,B93,C4 |
Chr1:71528636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C57 |
Chr1:71528638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,B93 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。