Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005466`

染色体: Chr01 坐标: 71654792-71658420 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005466`
名称	SmilChr01G005466
描述	uncharacterized SmilChr01G005466
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71654792 - 71658420 / `+`

ID 对照

NCBI Gene ID	`LOC131005797`
GeneID	`131005797`
locus_tag	`-`
NCBI Name	`LOC131005797`
原始查询	`LOC131005797`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821281]; symbol=AT3G03330; hit=AT3G03330; species=arabidopsis; confidence=high
产物	NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821281]; symbol=AT3G03330; hit=AT3G03330; species=arabidopsis; confidence=high
Arabidopsis	`AT3G03330` (AT3G03330) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821281] identity=67.9; qcov=0.991; evalue=8.35e-161; confidence=high
Rice	`Os11g0265400` - identity=67.7; qcov=0.957; evalue=1.3e-158; confidence=high
GO	GO:0016020 (membrane); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF00106 (adh_short); PF02719 (Polysacc_synt_2); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:131005797

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057788866.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057788866.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057788866.1`
4	Nucleus	细胞核	0.00000	`XP_057788866.1`
5	Chromosome	染色体	0.00000	`XP_057788866.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71655043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:71655679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr1:71655698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,B27,B63
`Chr1:71655824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,B27,B63
`Chr1:71655913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:71656564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B128,B75,B88,C10
`Chr1:71656567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C75,D10
`Chr1:71656868`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B122
`Chr1:71656868`	`C`	`CA`	1bp_insertion	CDS_variant	1	B122
`Chr1:71656872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:71657685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788866.1

327 aa

164

327

adh_short

Polysacc_synt_2

adh_short_C2

PF00106 adh_short 44-240 aa PF08659 KR 46-226 aa PF02719 Polysacc_synt_2 46-229 aa PF13561 adh_short_C2 50-257 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788866.1`	Pfam	`PF00106`	adh_short	Domain	44	240	3.7e-47	161.1	short chain dehydrogenase
`XP_057788866.1`	Pfam	`PF08659`	KR	Family	46	226	2.1e-13	51.3	KR domain
`XP_057788866.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	46	229	8.5e-05	22.6	Polysaccharide biosynthesis protein
`XP_057788866.1`	Pfam	`PF13561`	adh_short_C2	Domain	50	257	2.1e-34	119.9	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932883.1
TACAACACCAACAAAAATATTAACCAAGAAAAATAAAATAAGCAAAACTCTATGAAAAATAAGCGCATTTCTAGATCATAACGAGCCGTCTTTTACTTCTCTCTGAATTTCCAGCATCCACAGCTTATTATTGATTTATTTCACTCCAAAACTGCAGAAGAATCTTAGCAAGAAAAGGGAAATTTGATGTTGGCCCTCACAGTTTCTTCATTATTTCTAGCTGTTGGTGCCATTTTCTTCATCAAATTCCTCAAAGCCGA...

CDS

1 records

下载 CDS FASTA

LOC131005797
ATGTTGGCCCTCACAGTTTCTTCATTATTTCTAGCTGTTGGTGCCATTTTCTTCATCAAATTCCTCAAAGCCGATGGCGATTTCACGTTGCTGTCCAAAGGAAAAGTGAAGCGCGAAGAAATTGAGGATAAGGTTATTTGGATAACTGGAGCTAGCCGCGGTATTGGGGAAGTGCTTTCTAAACAACTTGCAAGTTTGGGAGCAAAGCTTATCATCTCTGCACGAAACGAAGGGGAACTAGAACGCGTCAAGAAGCAGCT...

Protein

1 records

下载 Protein FASTA

XP_057788866.1
MLALTVSSLFLAVGAIFFIKFLKADGDFTLLSKGKVKREEIEDKVIWITGASRGIGEVLSKQLASLGAKLIISARNEGELERVKKQLTGKHAPDEVVILPLDLSRGEEHLAEAVQKAESLFGGVGVDYVFHNAAFERPKSLALDVTEESLKATFDVNVLGPISLTRLLLPDMLKRGRGHFVVMSSAAGKTPAPGQAVYSASKFAVNGYFHTLRSELCRRGIKVTIVCPGPVKTATTSGTSSSQEKGSSEKRVSSERCAEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器