当前解析结果
SmilChr01G001511| 统一新 Gene ID | SmilChr01G001511 |
|---|---|
| 名称 | SmilChr01G001511 |
| 描述 | WAT1-related protein At1g25270-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28941503 - 28945444 / + |
| NCBI Gene ID | LOC131005820 |
|---|---|
| GeneID | 131005820 |
| locus_tag | - |
| NCBI Name | LOC131005820 |
| 原始查询 | LOC131005820 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At1g25270-like |
| 产物 | WAT1-related protein At1g25270-like |
| Arabidopsis | AT1G25270 (UMAMIT24)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:839110] identity=40.1; qcov=0.879; evalue=4.15e-86; confidence=medium |
| Rice | Os04g0687800 (OsUMAMIT7)- identity=48; qcov=0.82; evalue=8.63e-107; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005820 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788901.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057788901.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057788901.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788901.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788901.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28941569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D1 |
Chr1:28941667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,D9 |
Chr1:28942646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,C15,D9 |
Chr1:28942845 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C40 |
Chr1:28942851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:28942904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B3,B86,C15,C80 |
Chr1:28942932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr1:28942944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr1:28943004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B47,D7 |
Chr1:28943412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B18,B61,C4 |
Chr1:28945400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788901.1PF00892
EamA 16-153 aa
PF00892
EamA 193-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788901.1 |
Pfam | PF00892 |
EamA | Domain | 16 | 153 | 1.4e-23 | 84.4 | EamA-like transporter family |
XP_057788901.1 |
Pfam | PF00892 |
EamA | Domain | 193 | 331 | 1.4e-23 | 84.4 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。