当前解析结果
SmilChr01G005517| 统一新 Gene ID | SmilChr01G005517 |
|---|---|
| 名称 | SmilChr01G005517 |
| 描述 | sedoheptulose-1,7-bisphosphatase, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71983508 - 71987832 / - |
| NCBI Gene ID | LOC131005853 |
|---|---|
| GeneID | 131005853 |
| locus_tag | - |
| NCBI Name | LOC131005853 |
| 原始查询 | LOC131005853 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sedoheptulose-1,7-bisphosphatase, chloroplastic |
| 产物 | sedoheptulose-1%2C7-bisphosphatase%2C chloroplastic |
| Arabidopsis | AT3G55800 (SBPASE)sedoheptulose-bisphosphatase [Source:NCBI gene (formerly Entrezgene);Acc:824746] identity=81.3; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0234600- identity=79.3; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005986 (sucrose biosynthetic process); GO:0006000 (fructose metabolic process); GO:0006002 (fructose 6-phosphate metabolic process); GO:0006094 (gluconeogenesis); GO:0030388 (fructose 1,6-bisphosphate metabolic process); GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity) |
| KEGG | smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00316 (FBPase); PF18913 (FBPase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005853 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057788938.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057788938.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788938.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788938.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788938.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71983699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr1:71983801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,B90,B92,D10 |
Chr1:71983921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,B92,D10 |
Chr1:71984101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,C52 |
Chr1:71984105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr1:71984109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr1:71984239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B4,B99,C15,C58 |
Chr1:71984460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr1:71984462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C45,C60 |
Chr1:71984496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr1:71984735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B53,B66,D2,D7 |
Chr1:71984744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788938.1PF00316
FBPase 74-252 aa
PF18913
FBPase_C 259-379 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788938.1 |
Pfam | PF00316 |
FBPase | Domain | 74 | 252 | 2.3e-55 | 187.9 | Fructose-1-6-bisphosphatase, N-terminal domain |
XP_057788938.1 |
Pfam | PF18913 |
FBPase_C | Domain | 259 | 379 | 1.5e-37 | 129.0 | Fructose-1-6-bisphosphatase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。