Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G005758`

Chromosome: Chr01 Coordinates: 73661649-73671932 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G005758`
Name	SmilChr01G005758
Description	ABC transporter B family member 20-like
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	73661649 - 73671932 / `-`

ID Mapping

NCBI Gene ID	`LOC131005862`
GeneID	`131005862`
locus_tag	`-`
NCBI Name	`LOC131005862`
Original query	`LOC131005862`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	ABC transporter B family member 20-like
Product	ABC transporter B family member 20-like
Arabidopsis	`AT3G55320` (ABCB20) P-glycoprotein 20 [Source:NCBI gene (formerly Entrezgene);Acc:824698] identity=83.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0280000` (OsABCB13) - identity=78.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:131005862

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057788946.1`
2	Vacuole	液泡	0.80000	`XP_057788946.1`
3	Vacuole membrane	液泡膜	0.80000	`XP_057788946.1`
4	Nucleus	细胞核	0.00000	`XP_057788946.1`
5	Chromosome	染色体	0.00000	`XP_057788946.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:73662570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,B68
`Chr1:73662573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C61,C69
`Chr1:73662587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr1:73662711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B13
`Chr1:73662954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B76,D6
`Chr1:73662958`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B76
`Chr1:73662958`	`GA`	`G`	1bp_deletion	CDS_variant	1	B76
`Chr1:73662978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr1:73663143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,A5,B12
`Chr1:73663215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr1:73663839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr1:73664240`	`C`	`T`	EMS_canonical_SNV	stop_gained	108	A1,A13,A15,A18,A2,A25,A7,A8,B1,B101,B103,B105,B107,B108,B110,B111,B114,B117,B121,B122,B124,B127,B128,B13,B131,B137,B139,B19,B20,B21,B23,B24,B25,B26,B31,B32,B33,B35,B37,B38,B39,B46,B49,B53,B54,B55,B60,B61,B62,B65,B69,B71,B74,B77,B78,B81,B82,B84,B89,B9,B90,B92,B93,B94,B98,C1,C11,C12,C15,C17,C18,C2,C20,C21,C23,C25,C26,C31,C36,C4,C43,C44,C47,C48,C49,C5,C50,C51,C52,C58,C6,C60,C61,C62,C65,C69,C70,C71,C75,C76,C78,C80,C82,D1,D2,D3,D6,D7

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057788946.1

1399 aa

700

1399

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 83-351 aa PF00005 ABC_tran 422-567 aa PF00664 ABC_membrane 834-1095 aa PF00005 ABC_tran 1168-1316 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057788946.1`	Pfam	`PF00664`	ABC_membrane	Family	83	351	1.8e-86	291.0	ABC transporter transmembrane region
`XP_057788946.1`	Pfam	`PF00005`	ABC_tran	Domain	422	567	8.6e-54	182.6	ABC transporter
`XP_057788946.1`	Pfam	`PF00664`	ABC_membrane	Family	834	1095	1.8e-86	291.0	ABC transporter transmembrane region
`XP_057788946.1`	Pfam	`PF00005`	ABC_tran	Domain	1168	1316	8.6e-54	182.6	ABC transporter

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057932963.1
TTCAATGCTTTTCCGCTTTCCCAGCTCCCCTTTTTTTAGTTTAGCTCAGACCTCCGACGACCGTTGTTTTGACACTTTTTTGACGTTCTCTACTTTTAGAGAGAGAAAGTGAGAGAGAGAGAGACAGCAATTCAATTCAATTCCCTCACAAATCTCTCTCTTCGTTCTCGCCGCCGTTGCCAGCCACCAATCACCAGACTCCGCCTCACCAGTCAACCCAGCTCCTCCCGCCTTCTTTGACTCGGTCAATCCCCCAACTG...

CDS

1 records

Download CDS FASTA

LOC131005862
ATGATGATCTCCAGGGGTTTGTTCGGGTGGTCCCCGCCGCACATACAGCCGCTGACGCCGGTGTCGGAGGTGTCGGAGCCGCCGGAGTCGCCCTCGCCGTACACGGATATGGGGACGGGCGAGGCGGAGCCGGTGGAGATGGAGGAGGAGATGGACGCCGAGAACGAGGAGATGGAGCCGCCGCCTGCGGCGGTGCCGTTCTCCCAGCTGTTCGCCTGCGCGGACCAGCTCGACTGGGCGCTCATGTTTGTCGGATCTCT...

Protein

1 records

Download Protein FASTA

XP_057788946.1
MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYTDMGTGEAEPVEMEEEMDAENEEMEPPPAAVPFSQLFACADQLDWALMFVGSLAAAAHGTALVVYLHYFAKIIQLLRHDYSDELFDRFTELALSIVYIAVGVFVAAWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLIIGFVNCWQIALITLATGPLIVAAGGISNIFLHRLAENIQDAYA...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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