Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005624`

染色体: Chr01 坐标: 72718741-72722620 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005624`
名称	SmilChr01G005624
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72718741 - 72722620 / `+`

ID 对照

NCBI Gene ID	`LOC131005867`
GeneID	`131005867`
locus_tag	`-`
NCBI Name	`LOC131005867`
原始查询	`LOC131005867`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28; qcov=1; evalue=2.13e-69; confidence=low
Rice	`Os07g0186500` - identity=31.6; qcov=0.953; evalue=1.68e-73; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131005867

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057788953.1`
2	Cytosol	细胞质基质	0.20000	`XP_057788953.1`
3	Nucleus	细胞核	0.00000	`XP_057788953.1`
4	Chromosome	染色体	0.00000	`XP_057788953.1`
5	Centromere	着丝粒	0.00000	`XP_057788953.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72719147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:72719217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B88,C11,C21
`Chr1:72719503`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C52
`Chr1:72719503`	`ATC`	`A`	2bp_deletion	CDS_variant	1	C52
`Chr1:72719508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B28
`Chr1:72719593`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:72719660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B128,B58,C27,C51
`Chr1:72719903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,C82
`Chr1:72719991`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:72720037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr1:72720067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr1:72720195`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B111

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788953.1

889 aa

444

889

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 147-320 aa PF23559 WHD_DRP 402-474 aa PF23598 LRR_14 548-840 aa

XP_057788954.1

771 aa

386

771

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 29-202 aa PF23559 WHD_DRP 284-356 aa PF23598 LRR_14 430-722 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788953.1`	Pfam	`PF00931`	NB-ARC	Domain	147	320	1.3e-38	133.0	NB-ARC domain
`XP_057788953.1`	Pfam	`PF23559`	WHD_DRP	Domain	402	474	7.5e-16	58.6	Disease resistance protein Winged helix domain
`XP_057788953.1`	Pfam	`PF23598`	LRR_14	Repeat	548	840	3.5e-14	53.0	Leucine-rich repeat region
`XP_057788954.1`	Pfam	`PF00931`	NB-ARC	Domain	29	202	1.1e-38	133.3	NB-ARC domain
`XP_057788954.1`	Pfam	`PF23559`	WHD_DRP	Domain	284	356	6.4e-16	58.9	Disease resistance protein Winged helix domain
`XP_057788954.1`	Pfam	`PF23598`	LRR_14	Repeat	430	722	3.1e-14	53.2	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932971.1
AACGGTTATTACACATGGAGTAGCAGATGAGCTGAGCTGAAGCAAGATTTCTCGAACTTGATATTTTCTATCTGAATCATCTCTCTATCTTCCAGTTTCAGAGGTTTAGCTTGTGAACTTGGAATTGGGGATACCTCTGGCCATGAAATTCTGTATAACAAAGAACAAATTGAATGCTTCCTTGTTAAAGTGACTTACTTGCAAGCTTTTCTGGAAGATTTTTCCACAAAAAGCAGAAAAGAAGTTAAAGATCTCGAGGC...

XM_057932970.1
ACACATGGAGTAGCAGATGAGCTGAGCTGAAGCAAGATTTCTCGAACTTGATATTTTCTATCTGAATCATCTCTCTATCTTCCAGTTTCAGAGGTTTAGCTTGTGAACTTGGAATTGGGGATACCTCTGGTAAGCTCTAGTGTTTTCGTTCCAACTTTCTTATAAATGTTTCGTGATTGAGAAATTAGGGTTGTTTCATATTTTTCCCCCCTATTTTGAAAATACATGTTAATTAGCTTTTTCAATTGAACGACATGGCA...

CDS

2 records

下载 CDS FASTA

LOC131005867
ATGGCATATGCTGCTGTTGTATCTCTGGTACAAACGCTGGAATGCGTTATGAAAGGCCATGAAATTCTGTATAACAAAGAACAAATTGAATGCTTCCTTGTTAAAGTGACTTACTTGCAAGCTTTTCTGGAAGATTTTTCCACAAAAAGCAGAAAAGAAGTTAAAGATCTCGAGGCACAAATTGGAAATCTAGCTTGTGCAGCTAACGATGTCGTTGATTCTTATGCATCGAGTGAGCTTATTTCGGTGTGTGAATGTTG...

LOC131005867
ATGGATTTGAAGACTTTGGAATCCAAGAATTCCTTGTCAGCTGGTTTTTTGAATAGTGTTGAGAATGTTATGGTAGGATTTGATGATGAACTGATGCAGATAAAGGATAGGCTGACTGGAGCACCATCATATAAGCTCGATGTTATCTCCATAGTTGGTATGGGAGGAAGTGGTAAAACTACTCTTGCTAGAAATATCTATGATGATGAGTTTATTGTGTATCACTTCTATATTCGTGCTTGGGTGACTGTTTCACAAGA...

Protein

2 records

下载 Protein FASTA

XP_057788953.1
MAYAAVVSLVQTLECVMKGHEILYNKEQIECFLVKVTYLQAFLEDFSTKSRKEVKDLEAQIGNLACAANDVVDSYASSELISVCECCTDTNYSIFCQDLDNLLGEFDTAISKVLELRDMDLKTLESKNSLSAGFLNSVENVMVGFDDELMQIKDRLTGAPSYKLDVISIVGMGGSGKTTLARNIYDDEFIVYHFYIRAWVTVSQEYDVREILLALLKSTEKKLTSNFYEDSIDRLEEYLYKSLKGSRYLIVLDDMWERDI...

XP_057788954.1
MDLKTLESKNSLSAGFLNSVENVMVGFDDELMQIKDRLTGAPSYKLDVISIVGMGGSGKTTLARNIYDDEFIVYHFYIRAWVTVSQEYDVREILLALLKSTEKKLTSNFYEDSIDRLEEYLYKSLKGSRYLIVLDDMWERDIWDYIKQLCPDDGNGSRIVVTSRISDMALYASSNNPPYFMRFLNKDESWNLLKRRVFKDEDCPSELERVGYEIAQSCQGLPLAIALVGGLLTKVQRSLGPWRSVVENIKSVMATEVDPC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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