Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005659`

染色体: Chr01 坐标: 72936630-72940415 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005659`
名称	SmilChr01G005659
描述	pentatricopeptide repeat-containing protein At4g19890
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72936630 - 72940415 / `+`

ID 对照

NCBI Gene ID	`LOC131005873`
GeneID	`131005873`
locus_tag	`-`
NCBI Name	`LOC131005873`
原始查询	`LOC131005873`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g19890
产物	pentatricopeptide repeat-containing protein At4g19890
Arabidopsis	`AT4G19890` (AT4G19890) Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:10723133] identity=57.5; qcov=0.918; evalue=0; confidence=high
Rice	`Os11g0607100` - identity=48.4; qcov=0.871; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131005873

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057788961.1`
2	Nucleus	细胞核	0.00000	`XP_057788961.1`
3	Chromosome	染色体	0.00000	`XP_057788961.1`
4	Centromere	着丝粒	0.00000	`XP_057788961.1`
5	Chromatin	染色质	0.00000	`XP_057788961.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72936880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B36,C11,C69
`Chr1:72936881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr1:72936917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,D10
`Chr1:72936998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr1:72937130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B122,B41,C3
`Chr1:72937391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:72937412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr1:72937448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,C48
`Chr1:72937467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,D10
`Chr1:72937477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C82
`Chr1:72937615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:72937704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788961.1

707 aa

354

707

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_2

PPR

TPR_24

PPR_long

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PF01535 PPR 192-217 aa PF12854 PPR_1 215-247 aa PF01535 PPR 226-252 aa PF13041 PPR_2 226-267 aa PF13812 PPR_3 244-299 aa PF13041 PPR_2 257-302 aa PF01535 PPR 258-286 aa PF23276 TPR_24 258-337 aa PF17177 PPR_long 270-393 aa PF12854 PPR_1 286-317 aa PF13041 PPR_2 289-338 aa PF01535 PPR 293-322 aa PF13812 PPR_3 313-372 aa PF12854 PPR_1 320-349 aa PF01535 PPR 327-354 aa PF13041 PPR_2 330-374 aa PF13812 PPR_3 355-400 aa PF12854 PPR_1 357-389 aa PF13041 PPR_2 360-409 aa PF01535 PPR 363-393 aa PF17177 PPR_long 380-477 aa PF13812 PPR_3 384-440 aa PF12854 PPR_1 392-424 aa PF13041 PPR_2 395-444 aa PF01535 PPR 399-428 aa PF12854 PPR_1 426-456 aa PF13041 PPR_2 430-479 aa PF01535 PPR 434-457 aa PF13812 PPR_3 454-512 aa PF12854 PPR_1 461-493 aa PF13041 PPR_2 467-512 aa PF01535 PPR 468-498 aa PF17177 PPR_long 474-645 aa PF13041 PPR_2 501-549 aa PF01535 PPR 504-532 aa PF13812 PPR_3 523-580 aa PF12854 PPR_1 531-564 aa PF13041 PPR_2 535-584 aa PF01535 PPR 539-568 aa PF12854 PPR_1 567-598 aa PF01535 PPR 573-603 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	192	217	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	215	247	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	226	252	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	226	267	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF13812`	PPR_3	Repeat	244	299	5.4e-59	196.9	Pentatricopeptide repeat domain
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	257	302	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	258	286	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF23276`	TPR_24	Repeat	258	337	1.6e-36	125.9	Pentatricopeptide repeat-containing protein
`XP_057788961.1`	Pfam	`PF17177`	PPR_long	Repeat	270	393	5.1e-34	118.2	Pentacotripeptide-repeat region of PRORP
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	286	317	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	289	338	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	293	322	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF13812`	PPR_3	Repeat	313	372	5.4e-59	196.9	Pentatricopeptide repeat domain
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	320	349	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	327	354	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	330	374	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF13812`	PPR_3	Repeat	355	400	5.4e-59	196.9	Pentatricopeptide repeat domain
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	357	389	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	360	409	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	363	393	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF17177`	PPR_long	Repeat	380	477	5.1e-34	118.2	Pentacotripeptide-repeat region of PRORP
`XP_057788961.1`	Pfam	`PF13812`	PPR_3	Repeat	384	440	5.4e-59	196.9	Pentatricopeptide repeat domain
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	392	424	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	395	444	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	399	428	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	426	456	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	430	479	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	434	457	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF13812`	PPR_3	Repeat	454	512	5.4e-59	196.9	Pentatricopeptide repeat domain
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	461	493	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	467	512	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	468	498	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF17177`	PPR_long	Repeat	474	645	5.1e-34	118.2	Pentacotripeptide-repeat region of PRORP
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	501	549	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	504	532	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF13812`	PPR_3	Repeat	523	580	5.4e-59	196.9	Pentatricopeptide repeat domain
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	531	564	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF13041`	PPR_2	Repeat	535	584	6.1e-131	427.2	PPR repeat family
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	539	568	6.7e-91	293.1	PPR repeat
`XP_057788961.1`	Pfam	`PF12854`	PPR_1	Repeat	567	598	3.6e-116	379.2	PPR repeat
`XP_057788961.1`	Pfam	`PF01535`	PPR	Repeat	573	603	6.7e-91	293.1	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009095368.1
ATAAACAGTGAAATAAAGTATTGGGCCAAAGCCCATTAAAAAGGCCTGACAATACATCTCACAAAACCAACATCAAAACTGGCCCAATAATGTCTCTCTAATTTCCTCCTCCAAAAATTTCCGGCAAAATTCACCAATCAACCACCAGTGCCGCCGCCGCCGCTGCCGCCGCGGCGAACTTCTGCACAGAGAAAAAGTCAGACGCATTTCATGGTTTCCCTCGCGTGCATTCGTCTGAGTAAAAAAATCTGCTGCCGAAA...

XM_057932978.1
ATAAACAGTGAAATAAAGTATTGGGCCAAAGCCCATTAAAAAGGCCTGACAATACATCTCACAAAACCAACATCAAAACTGGCCCAATAATGTCTCTCTAATTTCCTCCTCCAAAAATTTCCGGCAAAATTCACCAATCAACCACCAGTGCCGCCGCCGCCGCTGCCGCCGCGGCGAACTTCTGCACAGAGAAAAAGTCAGACGCATTTCATGGTTTCCCTCGCGTGCATTCGTCTGAGTAAAAAAATCTGCTGCCGAAA...

CDS

1 records

下载 CDS FASTA

LOC131005873
ATGGTTTCCCTCGCGTGCATTCGTCTGAGTAAAAAAATCTGCTGCCGAAATGCAGCATTCACAGCACTCCTCAATGGCATCGCTCCTCTCTCTACTAATAATGTCAGACACATTTCTCACGCGACCGGCGTTGATCACTGCCCGGCAGCCTCACCGCACACCGTTGTTAAGAGAGTCTGTTTTTGGGTTTGCGATTCATATTATAATCAGCAGAGAAAACCAACTAATTTCGATTCAACGCGCCCTCAGCTAAACTTACC...

Protein

1 records

下载 Protein FASTA

XP_057788961.1
MVSLACIRLSKKICCRNAAFTALLNGIAPLSTNNVRHISHATGVDHCPAASPHTVVKRVCFWVCDSYYNQQRKPTNFDSTRPQLNLPIDADSLTAEQAISVVASLADEAGSMVALSFFHWAIRSVKFRHFMRFYIVAANCLIKNGNFERTHEVLRCMLWNFAEVGMLKESIDMVLELRSRGLVLSSHTLNCALSVVNEMGCVEMAQKVFDEMCERGVIPDSYTLESMIVAYCRAGRVSDADRWLSEMLSRGFLVDKATCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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