Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005644`

染色体: Chr01 坐标: 72856658-72859105 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005644`
名称	SmilChr01G005644
描述	L-type lectin-domain containing receptor kinase S.4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72856658 - 72859105 / `+`

ID 对照

NCBI Gene ID	`LOC131005876`
GeneID	`131005876`
locus_tag	`-`
NCBI Name	`LOC131005876`
原始查询	`LOC131005876`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	L-type lectin-domain containing receptor kinase S.4-like
产物	L-type lectin-domain containing receptor kinase S.4-like
Arabidopsis	`AT3G55550` (AT3G55550) Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824720] identity=66.1; qcov=0.898; evalue=0; confidence=high
Rice	`Os12g0574700` - identity=55; qcov=1.01; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131005876

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057788964.1`
2	Nucleus	细胞核	0.00000	`XP_057788964.1`
3	Chromosome	染色体	0.00000	`XP_057788964.1`
4	Centromere	着丝粒	0.00000	`XP_057788964.1`
5	Chromatin	染色质	0.00000	`XP_057788964.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72857262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B67,C58,C8,D3
`Chr1:72857299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B23,C22,C51
`Chr1:72857521`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B130
`Chr1:72857521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:72857795`	`G`	`A`	EMS_canonical_SNV	stop_gained	42	A1,A10,A20,A3,A5,B119,B123,B129,B131,B137,B14,B25,B28,B34,B44,B46,B48,B5,B6,B69,B71,B73,B93,B97,B98,C19,C23,C26,C32,C35,C41,C44,C46,C52,C54,C57,C62,C67,C68,C7,C76,C77
`Chr1:72857805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:72858081`	`T`	`TAA`	2bp_insertion	frameshift_variant	7	A25,A5,B5,C23,C44,C46,C68
`Chr1:72858708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,A21,B124,D10
`Chr1:72858729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr1:72858747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B80,C33,D4
`Chr1:72858798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C38,C52
`Chr1:72858939`	`CTG`	`C`	2bp_deletion	frameshift_variant	3	B80,C33,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788964.1

687 aa

344

687

Lectin_legB

Pkinase

PK_Tyr_Ser-Thr

PF00139 Lectin_legB 27-276 aa PF00069 Pkinase 347-548 aa PF07714 PK_Tyr_Ser-Thr 352-549 aa

XP_057788965.1

559 aa

280

559

Lectin_legB

Pkinase

PK_Tyr_Ser-Thr

PF00139 Lectin_legB 2-148 aa PF00069 Pkinase 219-420 aa PF07714 PK_Tyr_Ser-Thr 223-421 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788964.1`	Pfam	`PF00139`	Lectin_legB	Domain	27	276	8.5e-77	258.7	Legume lectin domain
`XP_057788964.1`	Pfam	`PF00069`	Pkinase	Domain	347	548	3.8e-45	155.1	Protein kinase domain
`XP_057788964.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	352	549	2.9e-43	148.8	Protein tyrosine and serine/threonine kinase
`XP_057788965.1`	Pfam	`PF00139`	Lectin_legB	Domain	2	148	8.8e-43	147.3	Legume lectin domain
`XP_057788965.1`	Pfam	`PF00069`	Pkinase	Domain	219	420	2.5e-45	155.7	Protein kinase domain
`XP_057788965.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	223	421	1.8e-43	149.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932981.1
GTGAAGCAATTCCGTTTACTTTCTACTATTTCAGTCACATGTGAAATTCATCATCCACACTTTTTCCATTTCTGAAATCGCAAAACGCCACAGCTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCTCCTTTCCTCTGAATCAACAGACAAACCACATGTAAAAAGGAATTGCCTAGCAAAACAATGATACTGAAAATCTTGGCTTGAAATTTGAAATCCCACCTCCTTTTTCTGCACTCGAGCACTGTTTGATC...

XM_057932982.1
TTCCATTTCTGAAATCGCAAAACGCCACAGCTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCCTCCTTTCCTCTGAATCAACAGACAAACCACATGTAAAAAGGAATTGCCTAGCAAAACAATGATACTGAAAATCTTGGCTTGAAATTTGAAATCCCACCTCCTTTTTCTGCACTCGAGCACTGTTTGATCATACATACATATAAAAAGGTGCAGGCACAAAAATCACTCTAAACGGCGTTGCTGAGATCGAGC...

CDS

2 records

下载 CDS FASTA

LOC131005876
ATGGTTTCAAAATCTGCACTTTTCTTGACCCCTCTTATCCTTCTCTTCCTTTCAAGCTCGGATTTCTCTCAGGCTGATGATGAGTTCATTTTCCATGGTTTCAGAGGTGCAGGCACAAAAATCACTCTAAACGGCGTTGCTGAGATCGAGCACAATGGTGTGCTTAGACTCACCAACAAAAGCCCAAGATTTGTGGGGCAGGCTTTCTATGAAACCCCAATTAAATTCAAGAATTCCACAGATGGTAAAGTTTCCTCCTT...

LOC131005876
ATGAATGATAAAAATGTTGGGAAATTCTCAAACCATGTATTGGCAGTTGAATTCGACACTGTGAAGGATTTTGCATTTGGGGATATTAATGATAATCATGTTGGGATTGATATAAACAGCATGATCTCAAATGCCTCTGTTGATGCTAGCTGTTTCAATAGGGATAACTCAAGAAAGGAAGGGATTAGCCTGCAGAGTGGTAGGAGGATTCAGGCTTGGATTGATTATGACTCCAGTGTTGGGAGATTGGATGTCACACT...

Protein

2 records

下载 Protein FASTA

XP_057788964.1
MVSKSALFLTPLILLFLSSSDFSQADDEFIFHGFRGAGTKITLNGVAEIEHNGVLRLTNKSPRFVGQAFYETPIKFKNSTDGKVSSFSTAFVFAIVPEYKKLGGHGFAFAIAKSKDFKGVLPNQYLGLMNDKNVGKFSNHVLAVEFDTVKDFAFGDINDNHVGIDINSMISNASVDASCFNRDNSRKEGISLQSGRRIQAWIDYDSSVGRLDVTLSLSSSKPSSPILSFPVDLSPILLQYMYVGFSASTGLLASSHYVSG...

XP_057788965.1
MNDKNVGKFSNHVLAVEFDTVKDFAFGDINDNHVGIDINSMISNASVDASCFNRDNSRKEGISLQSGRRIQAWIDYDSSVGRLDVTLSLSSSKPSSPILSFPVDLSPILLQYMYVGFSASTGLLASSHYVSGWSFMLNGQAQSLQLSLLPSIPGSWWNRVRLALGASLAVSVFLILAVGVLLYVVKRVKNRDVVESWELDLGPHRFSYKELKKATRGFRDKGLLGFGGFGRVYKGTLPNSNTQVAVKQISHGSKQGLQEF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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