Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005678`

染色体: Chr01 坐标: 73055593-73058885 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005678`
名称	SmilChr01G005678
描述	uncharacterized SmilChr01G005678
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73055593 - 73058885 / `-`

ID 对照

NCBI Gene ID	`LOC131005879`
GeneID	`131005879`
locus_tag	`-`
NCBI Name	`LOC131005879`
原始查询	`LOC131005879`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]; symbol=AT3G24530; hit=AT3G24530; species=arabidopsis; confidence=high
产物	AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]; symbol=AT3G24530; hit=AT3G24530; species=arabidopsis; confidence=high
Arabidopsis	`AT3G24530` (AT3G24530) AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048] identity=56.6; qcov=0.733; evalue=2.17e-179; confidence=high
Rice	`Os02g0266300` - identity=53.1; qcov=0.758; evalue=1.31e-170; confidence=high
GO	GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF00023 (Ank); PF04970 (LRAT); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF29043 (DUF8495)
InterPro	-
eggNOG	-
NR	GeneID:131005879

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057788971.1`
2	Cytoplasm	细胞质	0.40000	`XP_057788971.1`
3	Nucleus	细胞核	0.00000	`XP_057788971.1`
4	Chromosome	染色体	0.00000	`XP_057788971.1`
5	Centromere	着丝粒	0.00000	`XP_057788971.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73055864`	`G`	`A`	EMS_canonical_SNV	stop_gained	43	A14,A4,A5,A9,B10,B101,B106,B118,B120,B125,B135,B137,B139,B14,B19,B37,B43,B49,B52,B55,B58,B62,B78,B82,B90,B95,B98,C1,C20,C23,C25,C31,C35,C40,C50,C51,C54,C55,C57,C75,C86,D5,D6
`Chr1:73056076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr1:73056137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:73056150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,D10
`Chr1:73056153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,C12,C54
`Chr1:73056209`	`C`	`CCG`	2bp_insertion	frameshift_variant	2	C31,C72
`Chr1:73056209`	`C`	`CCG`	2bp_insertion	CDS_variant	2	C31,C72
`Chr1:73056229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B60,C11,C69
`Chr1:73056263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,D10
`Chr1:73056317`	`CG`	`C`	1bp_deletion	frameshift_variant	10	A11,A4,B10,B59,C11,C15,C19,C69,D6,D7
`Chr1:73056324`	`TC`	`T`	1bp_deletion	frameshift_variant	6	B133,B5,C70,C72,C74,C9
`Chr1:73056326`	`TTA`	`T`	2bp_deletion	frameshift_variant	157	A1,A10,A11,A14,A15,A18,A19,A2,A20,A22,A24,A25,A3,A4,A5,A7,A9,B1,B101,B102,B104,B105,B109,B11,B111,B112,B114,B115,B117,B118,B120,B123,B125,B127,B129,B131,B133,B134,B136,B138,B139,B14,B140,B15,B16,B17,B18,B2,B20,B21,B23,B24,B26,B3,B31,B32,B33,B34,B37,B40,B46,B47,B48,B52,B54,B57,B58,B59,B6,B61,B62,B65,B67,B68,B69,B7,B72,B73,B75,B8,B80,B81,B84,B85,B86,B90,B91,B92,B93,B98,C1,C10,C15,C16,C17,C18,C19,C20,C21,C24,C25,C26,C28,C3,C30,C31,C32,C34,C35,C36,C37,C38,C39,C4,C40,C41,C44,C45,C46,C47,C5,C50,C53,C54,C56,C57,C58,C59,C6,C60,C63,C64,C65,C66,C68,C7,C70,C71,C72,C73,C78,C8,C80,C82,C83,C84,C85,C86,C87,C9,D1,D2,D4,D5,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788971.1

662 aa

331

662

LRAT

Ank_4

Ank_2

Ank

Ank_5

Ank_2

Ank_3

Ank

Ank_4

Ank

AAA

DUF8495

PF04970 LRAT 14-149 aa PF13637 Ank_4 175-226 aa PF12796 Ank_2 175-272 aa PF00023 Ank 207-233 aa PF13857 Ank_5 235-283 aa PF12796 Ank_2 241-310 aa PF13606 Ank_3 242-270 aa PF00023 Ank 242-274 aa PF13637 Ank_4 247-285 aa PF00023 Ank 278-311 aa PF00004 AAA 437-543 aa PF29043 DUF8495 559-656 aa

XP_057788972.1

641 aa

320

641

LRAT

Ank_4

Ank_2

Ank

Ank_5

Ank_2

Ank_3

Ank

Ank_4

Ank

AAA

DUF8495

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788971.1`	Pfam	`PF04970`	LRAT	Domain	14	149	9.4e-18	65.4	Lecithin retinol acyltransferase
`XP_057788971.1`	Pfam	`PF13637`	Ank_4	Repeat	175	226	3e-21	75.7	Ankyrin repeats (many copies)
`XP_057788971.1`	Pfam	`PF12796`	Ank_2	Repeat	175	272	3.7e-30	105.0	Ankyrin repeats (3 copies)
`XP_057788971.1`	Pfam	`PF00023`	Ank	Repeat	207	233	3.8e-22	77.9	Ankyrin repeat
`XP_057788971.1`	Pfam	`PF13857`	Ank_5	Repeat	235	283	2.4e-15	57.1	Ankyrin repeats (many copies)
`XP_057788971.1`	Pfam	`PF12796`	Ank_2	Repeat	241	310	3.7e-30	105.0	Ankyrin repeats (3 copies)
`XP_057788971.1`	Pfam	`PF13606`	Ank_3	Repeat	242	270	1e-17	62.9	Ankyrin repeat
`XP_057788971.1`	Pfam	`PF00023`	Ank	Repeat	242	274	3.8e-22	77.9	Ankyrin repeat
`XP_057788971.1`	Pfam	`PF13637`	Ank_4	Repeat	247	285	3e-21	75.7	Ankyrin repeats (many copies)
`XP_057788971.1`	Pfam	`PF00023`	Ank	Repeat	278	311	3.8e-22	77.9	Ankyrin repeat
`XP_057788971.1`	Pfam	`PF00004`	AAA	Domain	437	543	8.8e-07	30.2	ATPase family associated with various cellular activities (AAA)
`XP_057788971.1`	Pfam	`PF29043`	DUF8495	Domain	559	656	3.6e-37	127.4	Domain of unknown function (DUF8495)
`XP_057788972.1`	Pfam	`PF04970`	LRAT	Domain	14	149	8.4e-18	65.5	Lecithin retinol acyltransferase
`XP_057788972.1`	Pfam	`PF13637`	Ank_4	Repeat	175	226	2.6e-21	75.9	Ankyrin repeats (many copies)
`XP_057788972.1`	Pfam	`PF12796`	Ank_2	Repeat	175	272	3.2e-30	105.3	Ankyrin repeats (3 copies)
`XP_057788972.1`	Pfam	`PF00023`	Ank	Repeat	207	233	3.2e-22	78.1	Ankyrin repeat
`XP_057788972.1`	Pfam	`PF13857`	Ank_5	Repeat	235	283	2.3e-15	57.2	Ankyrin repeats (many copies)
`XP_057788972.1`	Pfam	`PF12796`	Ank_2	Repeat	241	310	3.2e-30	105.3	Ankyrin repeats (3 copies)
`XP_057788972.1`	Pfam	`PF13606`	Ank_3	Repeat	242	270	8.8e-18	63.1	Ankyrin repeat
`XP_057788972.1`	Pfam	`PF00023`	Ank	Repeat	242	274	3.2e-22	78.1	Ankyrin repeat
`XP_057788972.1`	Pfam	`PF13637`	Ank_4	Repeat	247	285	2.6e-21	75.9	Ankyrin repeats (many copies)
`XP_057788972.1`	Pfam	`PF00023`	Ank	Repeat	278	311	3.2e-22	78.1	Ankyrin repeat
`XP_057788972.1`	Pfam	`PF00004`	AAA	Domain	408	522	1.5e-11	45.6	ATPase family associated with various cellular activities (AAA)
`XP_057788972.1`	Pfam	`PF29043`	DUF8495	Domain	538	635	3.4e-37	127.4	Domain of unknown function (DUF8495)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932989.1
TCCATCTATATAACACATAGCTCCTGTCTAAAAGAGTGCATCAGAGAGAGTGTGAGTGAGAGAGAGAGAGAGATGGCGGGGCGTCTCCCATATCAAGTGGAGAGACGCCACTTGTATCCAGGCGATCATATCTACACCCGCACAGCTCTTCGTGTGTACCATGGTATCTACAAGGGTGGAGACCAAGTGGTGCACTTCATTAGCCGGGCTCCACAAAGAAGAATGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATAT...

XM_057932988.1
TCCATCTATATAACACATAGCTCCTGTCTAAAAGAGTGCATCAGAGAGAGTGTGAGTGAGAGAGAGAGAGAGATGGCGGGGCGTCTCCCATATCAAGTGGAGAGACGCCACTTGTATCCAGGCGATCATATCTACACCCGCACAGCTCTTCGTGTGTACCATGGTATCTACAAGGGTGGAGACCAAGTGGTGCACTTCATTAGCCGGGCTCCACAAAGAAGAATGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATAT...

CDS

2 records

下载 CDS FASTA

LOC131005879
ATGGCGGGGCGTCTCCCATATCAAGTGGAGAGACGCCACTTGTATCCAGGCGATCATATCTACACCCGCACAGCTCTTCGTGTGTACCATGGTATCTACAAGGGTGGAGACCAAGTGGTGCACTTCATTAGCCGGGCTCCACAAAGAAGAATGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATATTGATCGTAACAGTGGAGTCGTCGTATCGTGTCTCGATTGCTTCCTTAACTCGGGATTGTTATTCCGTTATGG...

Protein

2 records

下载 Protein FASTA

XP_057788971.1
MAGRLPYQVERRHLYPGDHIYTRTALRVYHGIYKGGDQVVHFISRAPQRRMGRCSACDLLDYIDRNSGVVVSCLDCFLNSGLLFRYGYGVSAITFFWRSAFFNTTAESGPVEVVMERAENLLRTNGFGKYSFFTNNCENFAIYCKTGRSWNKGQAFFGSGGNTNPMPAATSPTNIHACVESGDLTALQTLLAQNPSSLNERSNVLIQTPSHIAASQNKVDIMKYLLEWSGSVNVELEANNAYGETPLHEAAKNGCNDAVR...

XP_057788972.1
MAGRLPYQVERRHLYPGDHIYTRTALRVYHGIYKGGDQVVHFISRAPQRRMGRCSACDLLDYIDRNSGVVVSCLDCFLNSGLLFRYGYGVSAITFFWRSAFFNTTAESGPVEVVMERAENLLRTNGFGKYSFFTNNCENFAIYCKTGRSWNKGQAFFGSGGNTNPMPAATSPTNIHACVESGDLTALQTLLAQNPSSLNERSNVLIQTPSHIAASQNKVDIMKYLLEWSGSVNVELEANNAYGETPLHEAAKNGCNDAVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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