Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005694`

染色体: Chr01 坐标: 73216336-73221954 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005694`
名称	SmilChr01G005694
描述	protein INVOLVED IN DE NOVO 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73216336 - 73221954 / `-`

ID 对照

NCBI Gene ID	`LOC131005881`
GeneID	`131005881`
locus_tag	`-`
NCBI Name	`LOC131005881`
原始查询	`LOC131005881`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein INVOLVED IN DE NOVO 2-like
产物	protein INVOLVED IN DE NOVO 2-like
Arabidopsis	`AT3G48670` (IDN2) XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824027] identity=55.5; qcov=0.978; evalue=0; confidence=high
Rice	`Os01g0633200` (X1) - identity=45.7; qcov=0.991; evalue=0; confidence=high
GO	GO:0080188 (gene silencing by siRNA-directed DNA methylation)
KEGG	-
Pfam	PF03468 (XS); PF03469 (XH); PF03470 (zf-XS)
InterPro	-
eggNOG	-
NR	GeneID:131005881

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057788974.1`
2	Cytoplasm	细胞质	0.40000	`XP_057788974.1`
3	Cytosol	细胞质基质	0.40000	`XP_057788974.1`
4	Chromosome	染色体	0.00000	`XP_057788974.1`
5	Centromere	着丝粒	0.00000	`XP_057788974.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73216548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr1:73216604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr1:73216650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr1:73218788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B95,C31,D2
`Chr1:73219979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B70,D11
`Chr1:73220218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:73220482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:73220483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B42,B43,C37
`Chr1:73220786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr1:73220847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788974.1

641 aa

320

641

zf-XS

PF03470 zf-XS 47-90 aa PF03468 XS 119-230 aa PF03469 XH 507-637 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788974.1`	Pfam	`PF03470`	zf-XS	Domain	47	90	2.7e-17	63.4	XS zinc finger domain
`XP_057788974.1`	Pfam	`PF03468`	XS	Domain	119	230	9.7e-44	149.0	XS domain
`XP_057788974.1`	Pfam	`PF03469`	XH	Domain	507	637	2.4e-56	190.0	XH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932991.1
ACATATTCTAGTTAGAAAGTGAATTTTTACTTTGGATTTTTTTTTTCTTATCGTACAAAATAAATAAATAAATACACCATTTTTTTAAGGGAAGAAAATATTTGCGATTAATTATGCAACAAATATGCAAACAGCATCACCATATTCGATGCATCATAAAATCACACTTTTTCACAGTTCTCTCCTCTGAGTGCTCAGTTATGAGTGTGCTCTCGTGAACCCCAGAGCCTCTCTCACTGTTGCTTTGACTCACCAAAATC...

CDS

1 records

下载 CDS FASTA

LOC131005881
ATGGGAAGTTCGGTAGAGCACAGTTCTGATGAAGATACTGATGTTAGCGACTCTGAGACTGAGGAGTATGCAGAGAAGGCATACGAAGAACTGAAGAATGCTAAACACCAGGTTAAATTATCTGATCAGGCTTACAGTTGCCCGTTCTGCCCTACAAAGAAAAGAAAGGACTTTCAGTATAAAGAACTTTTGCAGCATGCAAGTTCGATAGGCAGTTGCAGTTCACAGAAAAGGACTGGAAAAGACAAGGCAAATCACCT...

Protein

1 records

下载 Protein FASTA

XP_057788974.1
MGSSVEHSSDEDTDVSDSETEEYAEKAYEELKNAKHQVKLSDQAYSCPFCPTKKRKDFQYKELLQHASSIGSCSSQKRTGKDKANHLALAKYLESDIASEGGPSKPSDEVDALADQDRDEMFVWPWIGIVVNIPTSLKDGRYVGESGSKLRDELASKGFNPTRVRPLWNYQGHSGTAIVEFRKDWSGFTNAMSFEKDYESKHHGKRNWLVKNEKKSDLYGWVARADDYNSNNIVGENLRKIGDIRTISDLMEEEARKTNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器