当前解析结果
SmilChr01G005631| 统一新 Gene ID | SmilChr01G005631 |
|---|---|
| 名称 | SmilChr01G005631 |
| 描述 | wall-associated receptor kinase-like 20 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72760374 - 72764470 / - |
| NCBI Gene ID | LOC131005884 |
|---|---|
| GeneID | 131005884 |
| locus_tag | - |
| NCBI Name | LOC131005884 |
| 原始查询 | LOC131005884 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 20 |
| 产物 | wall-associated receptor kinase-like 20 |
| Arabidopsis | AT5G02070 (AT5G02070)Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831776] identity=53.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os05g0318100- identity=61.1; qcov=0.979; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005884 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788978.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057788978.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057788978.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057788978.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057788978.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72760600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:72760612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:72760618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B126,B80,C7,D11 |
Chr1:72760663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:72760704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:72760714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C8 |
Chr1:72760739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr1:72760742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr1:72760745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,A6,B58,B64,B88 |
Chr1:72760746 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,D9 |
Chr1:72760750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:72760817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,A6,B58,B64,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788978.1PF13947
GUB_WAK_bind 29-86 aa
PF00069
Pkinase 338-607 aa
PF07714
PK_Tyr_Ser-Thr 340-608 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788978.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 29 | 86 | 3.1e-07 | 31.4 | Wall-associated receptor kinase galacturonan-binding |
XP_057788978.1 |
Pfam | PF00069 |
Pkinase | Domain | 338 | 607 | 2.2e-44 | 152.6 | Protein kinase domain |
XP_057788978.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 340 | 608 | 2.3e-45 | 155.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。