当前解析结果
SmilChr01G005730| 统一新 Gene ID | SmilChr01G005730 |
|---|---|
| 名称 | SmilChr01G005730 |
| 描述 | receptor-like protein 9DC3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73440485 - 73444604 / + |
| NCBI Gene ID | LOC131005885 |
|---|---|
| GeneID | 131005885 |
| locus_tag | - |
| NCBI Name | LOC131005885 |
| 原始查询 | LOC131005885 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 9DC3 |
| 产物 | receptor-like protein 9DC3 |
| Arabidopsis | AT5G25910 (RLP52)receptor like protein 52 [Source:NCBI gene (formerly Entrezgene);Acc:832660] identity=35.1; qcov=1.07; evalue=4.25e-114; confidence=medium |
| Rice | Os12g0222900- identity=36.9; qcov=1.07; evalue=5.05e-111; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005885 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788979.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057788979.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057788979.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057788979.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057788979.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73441310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B48 |
Chr1:73442068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B104,B124 |
Chr1:73442081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C35,D10,D9 |
Chr1:73442089 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:73442158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B66 |
Chr1:73443390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B69,C85 |
Chr1:73443393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B98,C37,C82 |
Chr1:73443515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:73443587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,C20 |
Chr1:73443639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr1:73443659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B124 |
Chr1:73443674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,B35,B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788979.1PF00560
LRR_1 15-36 aa
PF13855
LRR_8 15-74 aa
PF00560
LRR_1 39-61 aa
PF00560
LRR_1 235-253 aa
PF00560
LRR_1 255-277 aa
PF00560
LRR_1 280-299 aa
PF00560
LRR_1 442-462 aa
PF13855
LRR_8 442-499 aa
PF00560
LRR_1 464-486 aa
PF00560
LRR_1 489-510 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 15 | 36 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 15 | 74 | 9.8e-41 | 138.1 | Leucine rich repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 39 | 61 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 235 | 253 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 255 | 277 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 280 | 299 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 442 | 462 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 442 | 499 | 9.8e-41 | 138.1 | Leucine rich repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 464 | 486 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
XP_057788979.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 489 | 510 | 1.3e-50 | 159.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。