Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005590`

染色体: Chr01 坐标: 72558686-72562304 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005590`
名称	SmilChr01G005590
描述	7-deoxyloganetic acid glucosyl transferase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72558686 - 72562304 / `-`

ID 对照

NCBI Gene ID	`LOC131005894`
GeneID	`131005894`
locus_tag	`-`
NCBI Name	`LOC131005894`
原始查询	`LOC131005894`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	7-deoxyloganetic acid glucosyl transferase-like
产物	7-deoxyloganetic acid glucosyl transferase-like
Arabidopsis	`AT1G22380` (UGT85A3) UDP-glucosyl transferase 85A3 [Source:NCBI gene (formerly Entrezgene);Acc:838845] identity=39.9; qcov=0.962; evalue=2.82e-119; confidence=medium
Rice	`Os07g0486700` - identity=40.3; qcov=0.946; evalue=3.64e-114; confidence=medium
GO	GO:0008194 (UDP-glycosyltransferase activity)
KEGG	-
Pfam	PF00201 (UDPGT)
InterPro	-
eggNOG	-
NR	GeneID:131005894

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057788993.1`
2	Cytoplasm	细胞质	0.60000	`XP_057788993.1`
3	Nucleus	细胞核	0.00000	`XP_057788993.1`
4	Chromosome	染色体	0.00000	`XP_057788993.1`
5	Centromere	着丝粒	0.00000	`XP_057788993.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72559477`	`CA`	`C`	1bp_deletion	frameshift_variant	19	B102,B111,B126,B135,B33,B4,B49,B52,B55,B6,B86,B90,B92,C67,C78,C80,C84,D2,D4
`Chr1:72559480`	`T`	`TTC`	2bp_insertion	frameshift_variant	6	A16,B121,B71,C16,C62,D7
`Chr1:72559481`	`TC`	`T`	1bp_deletion	frameshift_variant	56	A14,A15,A18,A21,A24,A4,B102,B104,B106,B109,B11,B110,B120,B130,B28,B29,B3,B48,B5,B51,B56,B57,B63,B71,B77,B79,B81,B87,B9,B96,B98,B99,C15,C16,C17,C25,C35,C38,C41,C52,C53,C54,C55,C58,C59,C61,C73,C75,C78,C82,C83,C84,C87,D11,D8,D9
`Chr1:72559493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B59,B75,C43,C48,C9
`Chr1:72559526`	`AC`	`A`	1bp_deletion	frameshift_variant	49	A1,A10,A11,A14,A24,B108,B114,B122,B124,B134,B22,B24,B25,B30,B37,B49,B56,B58,B72,B76,B79,B82,B84,B87,B9,B93,B94,B96,C18,C23,C38,C44,C45,C46,C47,C49,C52,C53,C54,C55,C60,C65,C7,C79,C83,C87,D3,D5,D8
`Chr1:72559913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B124,B41,C14
`Chr1:72560034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr1:72560044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:72560084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B125,B27,B90,B92
`Chr1:72560090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,D7,D9
`Chr1:72560249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr1:72560291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788993.1

506 aa

253

506

UDPGT

PF00201 UDPGT 312-438 aa

XP_057788994.1

505 aa

252

505

UDPGT

PF00201 UDPGT 311-437 aa

XP_057788995.1

504 aa

252

504

UDPGT

PF00201 UDPGT 312-438 aa

XP_057788996.1

503 aa

252

503

UDPGT

PF00201 UDPGT 311-437 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788993.1`	Pfam	`PF00201`	UDPGT	Family	312	438	8.5e-27	94.8	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057788994.1`	Pfam	`PF00201`	UDPGT	Family	311	437	8.6e-27	94.8	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057788995.1`	Pfam	`PF00201`	UDPGT	Family	312	438	8.5e-27	94.8	UDP-glucoronosyl and UDP-glucosyl transferase
`XP_057788996.1`	Pfam	`PF00201`	UDPGT	Family	311	437	8.5e-27	94.8	UDP-glucoronosyl and UDP-glucosyl transferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057933010.1
ATTCTACTTCATGAGATTCCATCCATCAATATTTCAATGGTTCATTAAATCTATGAATGCATATAAACAGTTACAGTCATTCGAGGATTTTGAATAACCCAAAATATCAAAATATTATGAGTTCCAAATTAGAAGAGGAGCTGCCGCCGCACGTGGTGATTTTCCCATTTCCGGCGCAGGGCCACATGAATTGCATGCTCAATCTCGCTCATCTCTTCTGTTTAACCGACTTCCACGTCACCTTCGTCGTGTCGGAATTC...

XM_057933011.1
ACTTCATGAGATTCCATCCATCAATATTTCAATGGTTCATTAAATCTATGAATGCATATAAACAGTTACAGTCATTCGAGGATTTTGAATAACCCAAAATATCAAAATATTATGAGTTCCAAATTAGAAGAGGAGCTGCCGCCGCACGTGGTGATTTTCCCATTTCCGGCGCAGGGCCACATGAATTGCATGCTCAATCTCGCTCATCTCTTCTGTTTAACCGACTTCCACGTCACCTTCGTCGTGTCGGAATTCAGCCA...

CDS

4 records

下载 CDS FASTA

LOC131005894
ATGCATATAAACAGTTACAGTCATTCGAGGATTTTGAATAACCCAAAATATCAAAATATTATGAGTTCCAAATTAGAAGAGGAGCTGCCGCCGCACGTGGTGATTTTCCCATTTCCGGCGCAGGGCCACATGAATTGCATGCTCAATCTCGCTCATCTCTTCTGTTTAACCGACTTCCACGTCACCTTCGTCGTGTCGGAATTCAGCCACCGCCTCCTCCTCAGCAGCACCTCCGTCCCCGCCACCTTCGCCGCCTATCC...

Protein

4 records

下载 Protein FASTA

XP_057788993.1
MHINSYSHSRILNNPKYQNIMSSKLEEELPPHVVIFPFPAQGHMNCMLNLAHLFCLTDFHVTFVVSEFSHRLLLSSTSVPATFAAYPGFQFRSIPDGLPDHHPRSGAKAADVVPAVTNHMVPLFKKMMAEEDFLASPHRRPATCFVADGFFTFAVDFAEENGIPLIYFRTPSASYFWAYFHVDDLIQAQEIPINAEKSMDLLVEGVPGMKGFLRRRDLPGFFRTYDLNEPLLQSLAVATKQIVRAQAVIFNTFDDLEGPI...

XP_057788994.1
MHINSYSHSRILNNPKYQNIMSSKLEEELPPHVVIFPFPAQGHMNCMLNLAHLFCLTDFHVTFVVSEFSHRLLLSSTSVPATFAAYPGFQFRSIPDGLPDHHPRSGAKAADVVPAVTNHMVPLFKKMMAEEDFLASPHRRPATCFVADGFFTFAVDFAEENGIPLIYFRTPSASYFWAYFHVDDLIQAQEIPINEKSMDLLVEGVPGMKGFLRRRDLPGFFRTYDLNEPLLQSLAVATKQIVRAQAVIFNTFDDLEGPIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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