当前解析结果
SmilChr01G005687| 统一新 Gene ID | SmilChr01G005687 |
|---|---|
| 名称 | SmilChr01G005687 |
| 描述 | protein FIZZY-RELATED 3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73164633 - 73167822 / + |
| NCBI Gene ID | LOC131005897 |
|---|---|
| GeneID | 131005897 |
| locus_tag | - |
| NCBI Name | LOC131005897 |
| 原始查询 | LOC131005897 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FIZZY-RELATED 3 |
| 产物 | protein FIZZY-RELATED 3 |
| Arabidopsis | AT5G13840 (FZR3)FIZZY-related 3 [Source:NCBI gene (formerly Entrezgene);Acc:831230] identity=78.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0972900 (OsWD40-33)- identity=69.8; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005680 (anaphase-promoting complex); GO:0010997 (anaphase-promoting complex binding); GO:0031145 (anaphase-promoting complex-dependent catabolic process); GO:1904668 (positive regulation of ubiquitin protein ligase activity); GO:1905786 (positive regulation of anaphase-promoting complex-dependent catabolic process); GO:1990757 (ubiquitin ligase activator activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40); PF08662 (eIF2A); PF24807 (WD40_CDC20-Fz) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005897 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789000.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057789000.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057789000.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057789000.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057789000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73164944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,C29,D9 |
Chr1:73164997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:73165050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr1:73165076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,C29,D9 |
Chr1:73165340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B14,B65,C35,C70 |
Chr1:73165349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B50,C29,D9 |
Chr1:73165371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:73165373 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B31 |
Chr1:73165373 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B31 |
Chr1:73165412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr1:73166033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr1:73166268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789000.1PF24807
WD40_CDC20-Fz 184-473 aa
PF00400
WD40 231-261 aa
PF00400
WD40 309-344 aa
PF08662
eIF2A 335-472 aa
PF00400
WD40 349-389 aa
PF00400
WD40 438-474 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789000.1 |
Pfam | PF24807 |
WD40_CDC20-Fz | Repeat | 184 | 473 | 9.4e-127 | 423.0 | CDC20/Fizzy WD40 domain |
XP_057789000.1 |
Pfam | PF00400 |
WD40 | Repeat | 231 | 261 | 2.7e-28 | 97.9 | WD domain, G-beta repeat |
XP_057789000.1 |
Pfam | PF00400 |
WD40 | Repeat | 309 | 344 | 2.7e-28 | 97.9 | WD domain, G-beta repeat |
XP_057789000.1 |
Pfam | PF08662 |
eIF2A | Repeat | 335 | 472 | 1.9e-07 | 31.9 | Eukaryotic translation initiation factor eIF2A |
XP_057789000.1 |
Pfam | PF00400 |
WD40 | Repeat | 349 | 389 | 2.7e-28 | 97.9 | WD domain, G-beta repeat |
XP_057789000.1 |
Pfam | PF00400 |
WD40 | Repeat | 438 | 474 | 2.7e-28 | 97.9 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。