当前解析结果
SmilChr01G005657| 统一新 Gene ID | SmilChr01G005657 |
|---|---|
| 名称 | SmilChr01G005657 |
| 描述 | probable E3 ubiquitin-protein ligase RHC2A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72917357 - 72919095 / + |
| NCBI Gene ID | LOC131005930 |
|---|---|
| GeneID | 131005930 |
| locus_tag | - |
| NCBI Name | LOC131005930 |
| 原始查询 | LOC131005930 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase RHC2A |
| 产物 | probable E3 ubiquitin-protein ligase RHC2A |
| Arabidopsis | AT3G46620 (RDUF1)zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823815] identity=51.2; qcov=0.846; evalue=8.9e-95; confidence=high |
| Rice | Os05g0110000 (OsRFP)- identity=67.2; qcov=0.656; evalue=7.14e-124; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF06547 (DUF1117); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14369 (Zn_ribbon_19); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005930 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057789034.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057789034.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057789034.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789034.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789034.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72917590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C52 |
Chr1:72917612 |
GTT |
G |
2bp_deletion | frameshift_variant | 1 | C45 |
Chr1:72917612 |
GTT |
G |
2bp_deletion | CDS_variant | 1 | C45 |
Chr1:72917659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C50 |
Chr1:72917830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B35 |
Chr1:72917872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C35 |
Chr1:72917999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C30,C65 |
Chr1:72918078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr1:72918092 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B10 |
Chr1:72918092 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B10 |
Chr1:72918145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr1:72918157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789034.1PF14369
Zn_ribbon_19 3-35 aa
PF13923
zf-C3HC4_2 196-237 aa
PF17123
zf-RING_11 197-224 aa
PF13445
zf-RING_UBOX 197-235 aa
PF00097
zf-C3HC4 197-237 aa
PF13639
zf-RING_2 197-238 aa
PF06547
DUF1117 270-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789034.1 |
Pfam | PF14369 |
Zn_ribbon_19 | Domain | 3 | 35 | 2.3e-13 | 50.7 | zinc-ribbon |
XP_057789034.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 196 | 237 | 6.7e-09 | 36.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057789034.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 197 | 224 | 1.1e-07 | 32.1 | RING-like zinc finger |
XP_057789034.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 197 | 235 | 1.6e-05 | 25.5 | RING-type zinc-finger |
XP_057789034.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 197 | 237 | 1e-06 | 29.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057789034.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 197 | 238 | 3.9e-12 | 46.9 | Ring finger domain |
XP_057789034.1 |
Pfam | PF06547 |
DUF1117 | Family | 270 | 374 | 3.1e-40 | 137.9 | Protein of unknown function (DUF1117) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。