当前解析结果
SmilChr01G005630| 统一新 Gene ID | SmilChr01G005630 |
|---|---|
| 名称 | SmilChr01G005630 |
| 描述 | mannose-1-phosphate guanylyltransferase 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72746687 - 72750171 / - |
| NCBI Gene ID | LOC131005939 |
|---|---|
| GeneID | 131005939 |
| locus_tag | - |
| NCBI Name | LOC131005939 |
| 原始查询 | LOC131005939 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mannose-1-phosphate guanylyltransferase 1-like |
| 产物 | mannose-1-phosphate guanylyltransferase 1-like |
| Arabidopsis | AT2G39770 (CYT1)Glucose-1-phosphate adenylyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818562] identity=89.5; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0237200 (OsMPG4)- identity=87.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0000032 (cell wall mannoprotein biosynthetic process); GO:0004475 (mannose-1-phosphate guanylyltransferase (GTP) activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006486 (GO:0006486); GO:0009298 (GDP-mannose biosynthetic process) |
| KEGG | smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00132 (Hexapep); PF00483 (NTP_transferase); PF12804 (NTP_transf_3); PF25087 (GMPPB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005939 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057789044.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057789044.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057789044.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789044.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789044.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72746995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B63 |
Chr1:72747012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:72747183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C4,D6 |
Chr1:72747184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B132,B137 |
Chr1:72747189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:72747259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B112,B115,C23 |
Chr1:72747355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:72747374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:72747400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B86,D11 |
Chr1:72747744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:72747812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B138,B28,C39 |
Chr1:72748261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789044.1PF00483
NTP_transferase 2-233 aa
PF12804
NTP_transf_3 3-137 aa
PF25087
GMPPB_C 251-360 aa
PF00132
Hexapep 261-294 aa
XP_057789045.1PF00483
NTP_transferase 2-233 aa
PF12804
NTP_transf_3 3-137 aa
PF25087
GMPPB_C 251-360 aa
PF00132
Hexapep 261-294 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789044.1 |
Pfam | PF00483 |
NTP_transferase | Family | 2 | 233 | 9.6e-61 | 206.2 | Nucleotidyl transferase |
XP_057789044.1 |
Pfam | PF12804 |
NTP_transf_3 | Domain | 3 | 137 | 2e-09 | 38.5 | MobA-like NTP transferase domain |
XP_057789044.1 |
Pfam | PF25087 |
GMPPB_C | Repeat | 251 | 360 | 4.6e-44 | 149.4 | GMPPB C-terminal domain |
XP_057789044.1 |
Pfam | PF00132 |
Hexapep | Repeat | 261 | 294 | 1.4e-09 | 37.9 | Bacterial transferase hexapeptide (six repeats) |
XP_057789045.1 |
Pfam | PF00483 |
NTP_transferase | Family | 2 | 233 | 9.6e-61 | 206.2 | Nucleotidyl transferase |
XP_057789045.1 |
Pfam | PF12804 |
NTP_transf_3 | Domain | 3 | 137 | 2e-09 | 38.5 | MobA-like NTP transferase domain |
XP_057789045.1 |
Pfam | PF25087 |
GMPPB_C | Repeat | 251 | 360 | 4.6e-44 | 149.4 | GMPPB C-terminal domain |
XP_057789045.1 |
Pfam | PF00132 |
Hexapep | Repeat | 261 | 294 | 1.4e-09 | 37.9 | Bacterial transferase hexapeptide (six repeats) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。