Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005579`

染色体: Chr01 坐标: 72517032-72519273 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005579`
名称	SmilChr01G005579
描述	uncharacterized SmilChr01G005579
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72517032 - 72519273 / `+`

ID 对照

NCBI Gene ID	`LOC131005941`
GeneID	`131005941`
locus_tag	`-`
NCBI Name	`LOC131005941`
原始查询	`LOC131005941`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Oshsp17.9A; symbol=Oshsp17.9A; hit=Os03g0266300; species=rice; confidence=low
产物	Oshsp17.9A; symbol=Oshsp17.9A; hit=Os03g0266300; species=rice; confidence=low
Arabidopsis	`AT1G53540` (AT1G53540) HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789] identity=61.8; qcov=0.314; evalue=1.48e-37; confidence=low
Rice	`Os03g0266300` (Oshsp17.9A) - identity=57.9; qcov=0.346; evalue=1.11e-38; confidence=low
GO	GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization)
KEGG	-
Pfam	PF00011 (HSP20); PF01107 (MP)
InterPro	-
eggNOG	-
NR	GeneID:131005941

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.40000	`XP_057789048.1`
2	Mitochondrion	线粒体	0.40000	`XP_057789048.1`
3	Cytoplasm	细胞质	0.20000	`XP_057789048.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057789048.1`
5	Nucleus	细胞核	0.00000	`XP_057789048.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72517867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:72517915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:72517920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B28
`Chr1:72517991`	`G`	`GT`	1bp_insertion	frameshift_variant	1	C17
`Chr1:72517991`	`G`	`GT`	1bp_insertion	CDS_variant	1	C17
`Chr1:72518018`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B108,C2,C23
`Chr1:72518018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,C2,C23
`Chr1:72518086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B45,C23,C80,D10
`Chr1:72518100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B78,B80,C19,C60
`Chr1:72518161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B78,B80,C19,C60,C69
`Chr1:72518191`	`TTG`	`T`	2bp_deletion	frameshift_variant	3	A9,B27,D10
`Chr1:72518191`	`TTG`	`T`	2bp_deletion	CDS_variant	3	A9,B27,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789048.1

350 aa

175

350

HSP20

PF01107 MP 45-157 aa PF00011 HSP20 244-348 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789048.1`	Pfam	`PF01107`	MP	Family	45	157	5.9e-07	30.0	Viral movement protein (MP)
`XP_057789048.1`	Pfam	`PF00011`	HSP20	Domain	244	348	4.3e-24	85.3	Hsp20/alpha crystallin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933065.1
AACTCTTGTATCCAGGGACGGAGCCAGGGGGGCTAGGGGGGGCTAGAGCCCCCTCCCAAATTTTGAGTTTTTTTTATATTTTTTATTTTTTTATTTTAAAATATATATAGATATATGTTTATACATATTATAAAATAATTTTGTTTTATAAAAGAGTATTTGGTTATTATATTCTCTCATATATACTTAATTTAAGGATAATTTTGTTTTTTAAAACTATATGATCTATGAAATATTGTTTGTTATTATTACTATTATAC...

CDS

1 records

下载 CDS FASTA

LOC131005941
ATGACCTCTGCAAAAATTGAAAAATCTCTAAAATCTCTTCATGATTGGAAACTGCCTCCATCTTCACCCTCGGATGCTTTTAAGCGAAGGTTTTTTTTCAAATTTTCTTCTCAACCTTCTTCTTCTACAGTCAAAACCATAGAGAAAGAAATTCGCTTATCTGAGGGATACGCAACGTTTCCTCTCTTCCCTGATCATCTTCAAAGAGTTTACAAAAGCAAATATTCCTACCTTCAGATGGAAATGATTCAGGTTGGTGT...

Protein

1 records

下载 Protein FASTA

XP_057789048.1
MTSAKIEKSLKSLHDWKLPPSSPSDAFKRRFFFKFSSQPSSSTVKTIEKEIRLSEGYATFPLFPDHLQRVYKSKYSYLQMEMIQVGVKPTKLGSNTSVIISLHDKRFQKFNYESLMGLVESSLCDGPIYFYYFPSHCVHMLDRNLCEAFTVDIKTQGCSKDENVILMYKFHYKPTYSNNVDFQKKKWSLARETTLFLTNIVGGRNRVVSKKIYWDQVSLPEAWFVRNDGGGGGGSVSSGEARVDWKEAAEAHVLKVDVPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器