Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005586`

染色体: Chr01 坐标: 72551412-72553133 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005586`
名称	SmilChr01G005586
描述	uncharacterized SmilChr01G005586
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72551412 - 72553133 / `+`

ID 对照

NCBI Gene ID	`LOC131005947`
GeneID	`131005947`
locus_tag	`-`
NCBI Name	`LOC131005947`
原始查询	`LOC131005947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789]; symbol=AT1G53540; hit=AT1G53540; species=arabidopsis; confidence=low
产物	HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789]; symbol=AT1G53540; hit=AT1G53540; species=arabidopsis; confidence=low
Arabidopsis	`AT1G53540` (AT1G53540) HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789] identity=60; qcov=0.321; evalue=4.19e-36; confidence=low
Rice	`Os03g0266300` (Oshsp17.9A) - identity=60.9; qcov=0.321; evalue=4.65e-36; confidence=low
GO	GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization)
KEGG	-
Pfam	PF00011 (HSP20); PF01107 (MP)
InterPro	-
eggNOG	-
NR	GeneID:131005947

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057789054.1`
2	Cytosol	细胞质基质	0.60000	`XP_057789054.1`
3	Nucleus	细胞核	0.00000	`XP_057789054.1`
4	Chromosome	染色体	0.00000	`XP_057789054.1`
5	Centromere	着丝粒	0.00000	`XP_057789054.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72551703`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B78
`Chr1:72551703`	`A`	`AT`	1bp_insertion	CDS_variant	1	B78
`Chr1:72551709`	`TA`	`T`	1bp_deletion	frameshift_variant	6	B106,B24,B48,B88,C34,C85
`Chr1:72551764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:72551766`	`G`	`GTA`	2bp_insertion	frameshift_variant	7	A16,B106,B24,B44,B64,B88,C69
`Chr1:72551805`	`C`	`CA`	1bp_insertion	frameshift_variant	7	A16,B106,B24,B44,B48,B64,C69
`Chr1:72551899`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B48,B77,C49,C69,C71
`Chr1:72551899`	`CA`	`C`	1bp_deletion	CDS_variant	5	B48,B77,C49,C69,C71
`Chr1:72551906`	`TCC`	`T`	2bp_deletion	frameshift_variant	5	B48,B77,C49,C69,C71
`Chr1:72551906`	`TCC`	`T`	2bp_deletion	CDS_variant	5	B48,B77,C49,C69,C71
`Chr1:72551911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B48,B77,C49,C69,C71
`Chr1:72551915`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B108,B35,B96,C2,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789054.1

343 aa

172

343

HSP20

PF01107 MP 45-157 aa PF00011 HSP20 239-341 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789054.1`	Pfam	`PF01107`	MP	Family	45	157	1.4e-09	38.5	Viral movement protein (MP)
`XP_057789054.1`	Pfam	`PF00011`	HSP20	Domain	239	341	3.4e-25	88.8	Hsp20/alpha crystallin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933071.1
TGCAATCTTAACTTATTCGACTATAAAGTTCAATGTATAGTGTTCTACACAATTATTGAAGCAACTGCTTAATCATACCACTATTTATCCTTGTCAAATGCAACAACTCTTGTACCTTGCCATTTCCACTTTAAAGTAGCTTTCATTTCATTATATTTTGCTCACGAGCTACACAATAACATGATGTTAATTAGAGTAATGTTCAGGTAAGTCTACTCATCCGTTTCTGATTATTGATAAATCTTAACCAATACTTAGAT...

CDS

1 records

下载 CDS FASTA

LOC131005947
ATGAACTCTGCAAAAATTGAAAAATCTCTAAAATCTCTTCATGATTGGAAACTGCCTCCATCTTCACCCTCAGATGCTTTTAAGCGAAGGTGTTTTTTCAAATTTTCTTCTCAACCTTCTTCTTCTACAGTCAAAACCATAGAGAAAGAAATTCGCTTATCTGAGGGATACGCAACGTTTCCTCTCTTCCCTGATCATCTTCAAAGAGTTTATAAAAACAAATATTCCTTCCTTCAGATGGAAATGATTCAGGTGGGTGT...

Protein

1 records

下载 Protein FASTA

XP_057789054.1
MNSAKIEKSLKSLHDWKLPPSSPSDAFKRRCFFKFSSQPSSSTVKTIEKEIRLSEGYATFPLFPDHLQRVYKNKYSFLQMEMIQVGVKPTKLGSNTSVIISLRDKRLIKFNESLLGLVESSLCDGPIYFYFFPSYCVHMSDRNLCEAFTVDIKTQGCSKDENVILMYKFHYKPTFSNNDFNKKKSIHIGETTLFLTNLVGGRNRVVSKKIYWDQVSLPEAWFVRNDGGGSVSSGEARVDWKEAAEAHVLKVDVPGFKKGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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