当前解析结果
SmilChr01G005581| 统一新 Gene ID | SmilChr01G005581 |
|---|---|
| 名称 | SmilChr01G005581 |
| 描述 | uncharacterized SmilChr01G005581 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72520570 - 72522051 / - |
| NCBI Gene ID | LOC131005954 |
|---|---|
| GeneID | 131005954 |
| locus_tag | - |
| NCBI Name | LOC131005954 |
| 原始查询 | LOC131005954 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Oshsp17.9A; symbol=Oshsp17.9A; hit=Os03g0266300; species=rice; confidence=low |
| 产物 | Oshsp17.9A; symbol=Oshsp17.9A; hit=Os03g0266300; species=rice; confidence=low |
| Arabidopsis | AT1G53540 (AT1G53540)HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789] identity=60.7; qcov=0.341; evalue=3.9e-37; confidence=low |
| Rice | Os03g0266300 (Oshsp17.9A)- identity=55.3; qcov=0.375; evalue=7.72e-38; confidence=low |
| GO | GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization) |
| KEGG | - |
| Pfam | PF00011 (HSP20); PF01107 (MP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005954 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057789062.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057789062.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789062.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789062.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789062.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72520767 |
T |
TA |
1bp_insertion | frameshift_variant | 33 | A14,A18,A21,A24,B106,B112,B118,B120,B28,B29,B48,B56,B77,B79,B85,B87,B9,B96,B97,C38,C49,C52,C53,C54,C55,C70,C73,C79,C83,C86,C87,D5,D8 |
Chr1:72520805 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C6 |
Chr1:72520805 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C6 |
Chr1:72520847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr1:72520914 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B59,B62,B99 |
Chr1:72520922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B55 |
Chr1:72521133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr1:72521138 |
G |
GC |
1bp_insertion | frameshift_variant | 42 | A15,A16,A19,A2,A23,A24,A25,A7,A8,B1,B107,B11,B12,B120,B123,B127,B132,B135,B137,B27,B38,B40,B47,B50,B55,B64,B72,B8,B86,B9,C12,C14,C54,C55,C57,C6,C61,C62,C84,D1,D7,D9 |
Chr1:72521256 |
ACC |
A |
2bp_deletion | frameshift_variant | 1 | B10 |
Chr1:72521256 |
ACC |
A |
2bp_deletion | CDS_variant | 1 | B10 |
Chr1:72521380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C87 |
Chr1:72521429 |
C |
CAA |
2bp_insertion | frameshift_variant | 14 | A14,A18,B112,B120,B28,B29,B56,B79,B87,C53,C75,C79,C86,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789062.1PF01107
MP 45-138 aa
PF00011
HSP20 220-327 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789062.1 |
Pfam | PF01107 |
MP | Family | 45 | 138 | 1e-06 | 29.2 | Viral movement protein (MP) |
XP_057789062.1 |
Pfam | PF00011 |
HSP20 | Domain | 220 | 327 | 3.3e-25 | 88.9 | Hsp20/alpha crystallin family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。