Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005731`

染色体: Chr01 坐标: 73447046-73458878 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005731`
名称	SmilChr01G005731
描述	receptor-like protein 12
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73447046 - 73458878 / `+`

ID 对照

NCBI Gene ID	`LOC131005958`
GeneID	`131005958`
locus_tag	`-`
NCBI Name	`LOC131005958`
原始查询	`LOC131005958`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 12
产物	receptor-like protein 12
Arabidopsis	`AT1G71400` (RLP12) receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481] identity=36; qcov=1.08; evalue=1.97e-64; confidence=medium
Rice	`Os01g0515300` - identity=34.5; qcov=1.01; evalue=6.87e-56; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131005958

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789069.1`
2	Nucleus	细胞核	0.00000	`XP_057789069.1`
3	Chromosome	染色体	0.00000	`XP_057789069.1`
4	Centromere	着丝粒	0.00000	`XP_057789069.1`
5	Chromatin	染色质	0.00000	`XP_057789069.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73453830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:73453930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,C10
`Chr1:73454079`	`C`	`CT`	1bp_insertion	frameshift_variant	41	A11,A6,A8,B11,B111,B112,B114,B117,B119,B121,B123,B126,B17,B19,B29,B41,B43,B51,B65,B67,B71,B74,B84,B91,B94,C2,C20,C29,C35,C36,C39,C41,C54,C56,C62,C7,C77,C79,C8,D11,D2
`Chr1:73454080`	`A`	`ACT`	2bp_insertion	frameshift_variant	37	A11,A6,A8,B11,B111,B112,B114,B117,B121,B123,B126,B17,B29,B41,B43,B51,B65,B71,B74,B84,B91,B94,C2,C20,C29,C35,C36,C39,C54,C56,C62,C7,C77,C79,C8,D11,D2
`Chr1:73454081`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B119,B67,C41
`Chr1:73454081`	`CA`	`C`	1bp_deletion	CDS_variant	3	B119,B67,C41
`Chr1:73454099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:73454107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B85,C13,C81
`Chr1:73454124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:73455184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr1:73455188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,C5,C52
`Chr1:73455189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B124,B125,C51,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789069.1

387 aa

194

387

LRR_1

LRR_14

LRR_8

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

PF00560 LRR_1 23-44 aa PF00560 LRR_1 70-91 aa PF00560 LRR_1 94-114 aa PF00560 LRR_1 141-162 aa PF23598 LRR_14 151-242 aa PF13855 LRR_8 165-224 aa PF00560 LRR_1 189-211 aa PF23598 LRR_14 206-286 aa PF00560 LRR_1 213-235 aa PF00560 LRR_1 237-259 aa PF00560 LRR_1 261-283 aa PF13855 LRR_8 286-344 aa PF00560 LRR_1 309-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	23	44	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	70	91	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	94	114	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	141	162	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF23598`	LRR_14	Repeat	151	242	1.7e-36	126.4	Leucine-rich repeat region
`XP_057789069.1`	Pfam	`PF13855`	LRR_8	Repeat	165	224	5.9e-35	119.5	Leucine rich repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	189	211	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF23598`	LRR_14	Repeat	206	286	1.7e-36	126.4	Leucine-rich repeat region
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	213	235	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	237	259	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	261	283	4e-41	130.8	Leucine Rich Repeat
`XP_057789069.1`	Pfam	`PF13855`	LRR_8	Repeat	286	344	5.9e-35	119.5	Leucine rich repeat
`XP_057789069.1`	Pfam	`PF00560`	LRR_1	Repeat	309	331	4e-41	130.8	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933086.1
TCGAGTTCTCTCCTTGGCCGCGTTTCTCCGCCGCCTTCTTCTCTTCCATTCGAGGAAATTGGAAATCTTTCTTCACTTGAGAGCATTATATTTTCAAACAACAACTTTAGTGGACATGTGCCAAGACAAATTGGGAATATCACACTGCTCAAGGAATTAGACCTTAGTTGGAACAATTTGGGAGGAAGCATTCCACAGGAAATTGGAAATCTTTCTTCACTTGAGAGCATTATATTTTCAAACAACAACTTTAGTGGACA...

CDS

1 records

下载 CDS FASTA

LOC131005958
ATGAGTGGAAACTCTTTTCATGGTCGGCTACCAAAGGACATTTGCACGCACAATAACCTTCAAAGACTTAAACTAGTGAACCTATCCTTTAACAATTTGGAAGGAGATATACCATCGAGTTTGTACCAATGTCCACAACTTGAGAGTATTCGCTTGTCAAACAACAACTTTGGCGGATATGTGCCACAAATTTGGAATATCACACTGCTGAAGGAATTAGACCTTGGTTCGAACCATTTGAGGGGTGATATTCCGAAGGA...

Protein

1 records

下载 Protein FASTA

XP_057789069.1
MSGNSFHGRLPKDICTHNNLQRLKLVNLSFNNLEGDIPSSLYQCPQLESIRLSNNNFGGYVPQIWNITLLKELDLGSNHLRGDIPKEIGYLNYLEVLDMRNNKFSGRLPRQLWNVTTLRELYIANIPLIGGIPKEIDNLNNLEILDMSYNNLCEPFPRQIWNITTLRKLHLRDASLYGIIPSTIENLSNLQWLELSSNQLNGPIPSTIGNLSNLQYLRLSSNKLNGPIPSTIGNLSNLWGLWLSSNKLNDELPSSICNLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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