当前解析结果
SmilChr01G005712| 统一新 Gene ID | SmilChr01G005712 |
|---|---|
| 名称 | SmilChr01G005712 |
| 描述 | uncharacterized SmilChr01G005712 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73337500 - 73338856 / + |
| NCBI Gene ID | LOC131005981 |
|---|---|
| GeneID | 131005981 |
| locus_tag | - |
| NCBI Name | LOC131005981 |
| 原始查询 | LOC131005981 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836054]; symbol=AT5G59350; hit=AT5G59350; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836054]; symbol=AT5G59350; hit=AT5G59350; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G59350 (AT5G59350)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836054] identity=37.6; qcov=0.89; evalue=1.88e-25; confidence=medium |
| Rice | Os11g0703600- identity=39.9; qcov=0.506; evalue=2.23e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057789105.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057789105.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057789105.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789105.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789105.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73337908 |
AT |
A |
1bp_deletion | frameshift_variant | 62 | A15,A5,A8,B1,B100,B103,B117,B132,B21,B23,B26,B40,B41,B43,B5,B54,B55,B56,B65,B71,B76,B78,B8,B83,B90,B99,C15,C17,C18,C2,C20,C21,C24,C29,C34,C35,C4,C40,C42,C43,C45,C46,C48,C53,C56,C58,C59,C60,C64,C65,C67,C69,C71,C72,C76,C82,C87,D10,D2,D4,D7,D8 |
Chr1:73337955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B62,C38,C46,C69,D7 |
Chr1:73338003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr1:73338115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr1:73338211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B2,B23 |
Chr1:73338261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C39 |
Chr1:73338297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr1:73338339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,C25 |
Chr1:73338365 |
TCC |
T |
2bp_deletion | frameshift_variant | 4 | B139,B98,C18,C22 |
Chr1:73338365 |
TCC |
T |
2bp_deletion | CDS_variant | 4 | B139,B98,C18,C22 |
Chr1:73338389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B20 |
Chr1:73338426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。