Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005576`

染色体: Chr01 坐标: 72499456-72500360 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005576`
名称	SmilChr01G005576
描述	17.6 kDa class I heat shock protein-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72499456 - 72500360 / `-`

ID 对照

NCBI Gene ID	`LOC131005986`
GeneID	`131005986`
locus_tag	`-`
NCBI Name	`LOC131005986`
原始查询	`LOC131005986`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	17.6 kDa class I heat shock protein-like
产物	17.6 kDa class I heat shock protein-like
Arabidopsis	`AT1G53540` (AT1G53540) HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789] identity=53.3; qcov=0.833; evalue=1.55e-46; confidence=medium
Rice	`Os03g0267200` (OsHsp17.7) - identity=54; qcov=0.747; evalue=4.17e-45; confidence=medium
GO	GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00011 (HSP20)
InterPro	-
eggNOG	-
NR	GeneID:131005986

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057789111.1`
2	Cytoplasm	细胞质	1.00000	`XP_057789113.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057789111.1`
4	Nucleus	细胞核	0.00000	`XP_057789112.1`
5	Chromosome	染色体	0.00000	`XP_057789112.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72499508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,C17
`Chr1:72499509`	`GC`	`G`	1bp_deletion	frameshift_variant	5	A15,B107,B86,C55,D1
`Chr1:72499509`	`GC`	`G`	1bp_deletion	CDS_variant	5	A15,B107,B86,C55,D1
`Chr1:72499906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B107,B86,C55,D1
`Chr1:72500167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789111.1

232 aa

116

232

HSP20

PF00011 HSP20 45-141 aa

XP_057789112.1

222 aa

111

222

HSP20

PF00011 HSP20 45-141 aa

XP_057789113.1

215 aa

108

215

HSP20

PF00011 HSP20 45-141 aa

XP_057789114.1

210 aa

105

210

HSP20

PF00011 HSP20 45-141 aa

XP_057789115.1

203 aa

102

203

HSP20

PF00011 HSP20 45-141 aa

XP_057789116.1

198 aa

198

HSP20

PF00011 HSP20 45-153 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789111.1`	Pfam	`PF00011`	HSP20	Domain	45	141	1.9e-23	83.2	Hsp20/alpha crystallin family
`XP_057789112.1`	Pfam	`PF00011`	HSP20	Domain	45	141	1.4e-23	83.7	Hsp20/alpha crystallin family
`XP_057789113.1`	Pfam	`PF00011`	HSP20	Domain	45	141	5.6e-24	84.9	Hsp20/alpha crystallin family
`XP_057789114.1`	Pfam	`PF00011`	HSP20	Domain	45	141	8.3e-24	84.4	Hsp20/alpha crystallin family
`XP_057789115.1`	Pfam	`PF00011`	HSP20	Domain	45	141	1.2e-24	87.0	Hsp20/alpha crystallin family
`XP_057789116.1`	Pfam	`PF00011`	HSP20	Domain	45	153	1.1e-25	90.4	Hsp20/alpha crystallin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057933133.1
ACATGCGAGAATGATCCGCTCATTCCACATCGAATCTCCTCTAGCCACTATATTTACATGAAATCTCGCTTCTATAATATTTCACATCAAAAAAAATTCATCCATCGTCAAAATCTGCTTCAAAAATCTTCCCACAAATCATTGATCAATAAAATCTGAGAAAAATGTCGTCGATTCCAAACATGTTCGGAGACTGCCGCAGCCACGCGTTCGACCCGTTCTTGATGAATTTATGGGCGCATTCTGGGGGCTCCGCCGTC...

XM_057933132.1
CATGCGAGAATGATCCGCTCATTCCACATCGAATCTCCTCTAGCCACTATATTTACATGAAATCTCGCTTCTATAATATTTCACATCAAAAAAAATTCATCCATCGTCAAAATCTGCTTCAAAAATCTTCCCACAAATCATTGATCAATAAAATCTGAGAAAAATGTCGTCGATTCCAAACATGTTCGGAGACTGCCGCAGCCACGCGTTCGACCCGTTCTTGATGAATTTATGGGCGCATTCTGGGGGCTCCGCCGTCG...

CDS

6 records

下载 CDS FASTA

LOC131005986
ATGTCGTCGATTCCAAACATGTTCGGAGACTGCCGCAGCCACGCGTTCGACCCGTTCTTGATGAATTTATGGGCGCATTCTGGGGGCTCCGCCGTCGCCAATAAAACCACGGTGGCGGCCAAGGCCTGCGTTGACTGGAAAGAGACGGCGGAGGCTCATGTGTTGAAGGTGGATCTTCCCGGAGTGAAGAAAGGCGAAGTTAAGGTGGAGGTTGAAAACGGATGCATTATTCAGATTAGTGGAGAGAGAAGGCTGGAGGA...

Protein

6 records

下载 Protein FASTA

XP_057789111.1
MSSIPNMFGDCRSHAFDPFLMNLWAHSGGSAVANKTTVAAKACVDWKETAEAHVLKVDLPGVKKGEVKVEVENGCIIQISGERRLEEEKNENVKWRLVERSSGKFMRRFRLPENANLAKAKVAMENGVLTVTVPKEEPKQVQVPKEEPKQKQEEPKQVQVPKEEPKQKQEEPKQVQVPKEEPKQVQVKVTDSLRELIEELRCMNDVVVKVTDSLHELIEELSMNQNDVEREI

XP_057789112.1
MSSIPNMFGDCRSHAFDPFLMNLWAHSGGSAVANKTTVAAKACVDWKETAEAHVLKVDLPGVKKGEVKVEVENGCIIQISGERRLEEEKNENVKWRLVERSSGKFMRRFRLPENANLAKAKVAMENGVLTVTVPKEEPKQVQVPKEEPKQKQEEPKQKQEEPKQVQVPKEEPKQVQVKVTDSLRELIEELRCMNDVVVKVTDSLHELIEELSMNQNDVEREI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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