当前解析结果
SmilChr01G000241| 统一新 Gene ID | SmilChr01G000241 |
|---|---|
| 名称 | SmilChr01G000241 |
| 描述 | uncharacterized SmilChr01G000241 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 4497896 - 4500637 / + |
| NCBI Gene ID | LOC131006011 |
|---|---|
| GeneID | 131006011 |
| locus_tag | - |
| NCBI Name | LOC131006011 |
| 原始查询 | LOC131006011 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=36.6; qcov=0.138; evalue=5.51e-09; confidence=weak |
| Rice | Os04g0191000- identity=25.4; qcov=0.632; evalue=1.31e-24; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006011 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057789181.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057789181.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789181.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789181.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789181.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:4497905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C7 |
Chr1:4497910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B60,B99,C51 |
Chr1:4497928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B14,B30 |
Chr1:4497937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,D10 |
Chr1:4498014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B83,D2 |
Chr1:4498018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:4498033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr1:4498037 |
C |
T |
EMS_canonical_SNV | stop_gained | 22 | B139,B26,B35,B39,B40,B44,B66,B85,B98,B99,C24,C34,C50,C55,C65,C72,C75,C79,C83,D3,D7,D8 |
Chr1:4498041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:4498051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B114,C6 |
Chr1:4498057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,D10 |
Chr1:4498061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789181.1PF17919
RT_RNaseH_2 89-146 aa
PF17917
RT_RNaseH 89-175 aa
PF00075
RNase_H 223-305 aa
PF13456
RVT_3 227-343 aa
PF17921
Integrase_H2C2 433-461 aa
PF31073
DUF8803 665-728 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789181.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 89 | 146 | 1.6e-11 | 44.9 | RNase H-like domain found in reverse transcriptase |
XP_057789181.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 89 | 175 | 7.6e-19 | 68.5 | RNase H-like domain found in reverse transcriptase |
XP_057789181.1 |
Pfam | PF00075 |
RNase_H | Domain | 223 | 305 | 1e-08 | 36.1 | RNase H |
XP_057789181.1 |
Pfam | PF13456 |
RVT_3 | Domain | 227 | 343 | 2.7e-14 | 53.9 | Reverse transcriptase-like |
XP_057789181.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 433 | 461 | 7.8e-07 | 29.9 | Integrase zinc binding domain |
XP_057789181.1 |
Pfam | PF31073 |
DUF8803 | Domain | 665 | 728 | 3.3e-27 | 94.8 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。