当前解析结果
SmilChr01G005544| 统一新 Gene ID | SmilChr01G005544 |
|---|---|
| 名称 | SmilChr01G005544 |
| 描述 | kelch repeat-containing protein 3-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72249580 - 72252845 / + |
| NCBI Gene ID | LOC131006020 |
|---|---|
| GeneID | 131006020 |
| locus_tag | - |
| NCBI Name | LOC131006020 |
| 原始查询 | LOC131006020 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kelch repeat-containing protein 3-like |
| 产物 | kelch repeat-containing protein 3-like |
| Arabidopsis | AT5G50310 (AT5G50310)Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835096] identity=81.6; qcov=0.737; evalue=2.88e-46; confidence=medium |
| Rice | Os04g0483600- identity=82.6; qcov=0.729; evalue=5.45e-50; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006020 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789155.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057789156.1 |
| 3 | Nucleus | 细胞核 | 1.00000 | XP_057789157.1 |
| 4 | Nucleoplasm | 核质 | 0.60000 | XP_057789156.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789155.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72249928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:72249950 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B33,B68,C48 |
Chr1:72249950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B68,C48 |
Chr1:72250791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:72251553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B114,B14 |
Chr1:72251607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:72251629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,C82 |
Chr1:72251631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,D10 |
Chr1:72251653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,C75 |
Chr1:72251678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B6,B8 |
Chr1:72251706 |
ATG |
A |
2bp_deletion | frameshift_variant | 3 | A20,B108,B79 |
Chr1:72251706 |
ATG |
A |
2bp_deletion | CDS_variant | 3 | A20,B108,B79 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。