Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005766`

染色体: Chr01 坐标: 73749412-73754693 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005766`
名称	SmilChr01G005766
描述	uncharacterized SmilChr01G005766
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73749412 - 73754693 / `+`

ID 对照

NCBI Gene ID	`LOC131006068`
GeneID	`131006068`
locus_tag	`-`
NCBI Name	`LOC131006068`
原始查询	`LOC131006068`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CAP-gly domain linker [Source:NCBI gene (formerly Entrezgene);Acc:824672]; symbol=AT3G55060; hit=AT3G55060; species=arabidopsis; confidence=medium
产物	CAP-gly domain linker [Source:NCBI gene (formerly Entrezgene);Acc:824672]; symbol=AT3G55060; hit=AT3G55060; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G55060` (AT3G55060) CAP-gly domain linker [Source:NCBI gene (formerly Entrezgene);Acc:824672] identity=41.4; qcov=1.02; evalue=0; confidence=medium
Rice	`Os07g0686400` - identity=41.6; qcov=0.618; evalue=1.28e-119; confidence=medium
GO	-
KEGG	-
Pfam	PF24670 (DUF7653)
InterPro	-
eggNOG	-
NR	GeneID:131006068

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057789191.1`
2	Centriole	Centriole	0.20000	`XP_057789191.1`
3	Phragmoplast	Phragmoplast	0.20000	`XP_057789191.1`
4	Cytosol	细胞质基质	0.20000	`XP_057789191.1`
5	Nucleus	细胞核	0.00000	`XP_057789191.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73751192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr1:73751257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr1:73751495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:73751523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C4,C86
`Chr1:73751907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:73751974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr1:73751996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B54,B58,C63
`Chr1:73752076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B140,B82,C14,C59
`Chr1:73752124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,C11,C69
`Chr1:73752150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:73752301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,C82
`Chr1:73752319`	`A`	`AG`	1bp_insertion	frameshift_variant	21	B101,B114,B117,B121,B20,B25,B37,B39,B71,B74,B76,B92,B94,C23,C31,C4,C52,C75,C82,D2,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789191.1

937 aa

468

937

DUF7653

PF24670 DUF7653 605-734 aa

XP_057789192.1

937 aa

468

937

DUF7653

PF24670 DUF7653 605-734 aa

XP_057789193.1

937 aa

468

937

DUF7653

PF24670 DUF7653 605-734 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789191.1`	Pfam	`PF24670`	DUF7653	Domain	605	734	3.9e-49	166.6	Domain of unknown function (DUF7653)
`XP_057789192.1`	Pfam	`PF24670`	DUF7653	Domain	605	734	3.9e-49	166.6	Domain of unknown function (DUF7653)
`XP_057789193.1`	Pfam	`PF24670`	DUF7653	Domain	605	734	3.9e-49	166.6	Domain of unknown function (DUF7653)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933209.1
ACTAATGAAGCTAATTTTTCTCCATTTTCTTTAGATTTTAAAGCCCCGCTCTCCAACGGCCGCCTTTTTCAATTTCCTCTCTCTCTCTCTCTCTAGACGTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCCCCTAATTGATTGTACTGTGATACTGTTAATCTTCCTTTATTTCTCATTTTGCTGTACCAATCAATCGCCTTTTTTCTCCATTCTGTGCGCCAGATTTCGTGGAGTGGTTTATATTTGGGT...

XM_057933208.1
TAGACGTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCCCCTAATTGATTGTACTGTGATACTGTTAATCTTCCTTTATTTCTCATTTTGCTGTACCAATCAATCGCCTTTTTTCTCCATTCTGTGCGCCAGATTTCGTGGAGTGGTTTATATTTGGTAAGTAAACCCCGGTGCTCATCTTCTGAATTGATGGCTTGATTTCCCTGAAGAATGTTTGGATCTCTTTTTGTATTTCAAGTTTTTAAAAGTTCA...

CDS

3 records

下载 CDS FASTA

LOC131006068
ATGAAGAAGCTATTCTTTTTCAGATCAAGTTCATCAAACAATGTCTCCCCACCATCAACAGATAAGCAAGTTTACTGGGAGAAACCAACTGAGAGAGTTGATAAGTCTGTTAAAAATAAGCATGCCTCAGAAGATCAGGTATTCGGCAGCACACCCATTCTAAGAAGAAGCCTCTCATTTTCATCTGGGTCTCTTTATGACACCGGAAAAGGGCTAAGGAACAACAGTGAGCAAACTGGTTCTCCACATAGTTCTGGTCA...

Protein

3 records

下载 Protein FASTA

XP_057789191.1
MKKLFFFRSSSSNNVSPPSTDKQVYWEKPTERVDKSVKNKHASEDQVFGSTPILRRSLSFSSGSLYDTGKGLRNNSEQTGSPHSSGHHPNKQSGHRSSRCRTLTPERQTRANFVDTVMLRNAQSMEQYGCTVSGAHSDLSDISSYCSSNVSSKVLDRYIDGEQIERYETKSDFSTRNQFENGNVVKKPPKFSAPVAHDARKQKPKSRSFREIKTSQVQLSSKDGCDTGYCNESPRKLAKHVVERLSQSQFQPKMRSKEFD...

XP_057789192.1
MKKLFFFRSSSSNNVSPPSTDKQVYWEKPTERVDKSVKNKHASEDQVFGSTPILRRSLSFSSGSLYDTGKGLRNNSEQTGSPHSSGHHPNKQSGHRSSRCRTLTPERQTRANFVDTVMLRNAQSMEQYGCTVSGAHSDLSDISSYCSSNVSSKVLDRYIDGEQIERYETKSDFSTRNQFENGNVVKKPPKFSAPVAHDARKQKPKSRSFREIKTSQVQLSSKDGCDTGYCNESPRKLAKHVVERLSQSQFQPKMRSKEFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器