Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005771`

染色体: Chr01 坐标: 73789264-73792285 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005771`
名称	SmilChr01G005771
描述	uncharacterized SmilChr01G005771
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73789264 - 73792285 / `-`

ID 对照

NCBI Gene ID	`LOC131006074`
GeneID	`131006074`
locus_tag	`-`
NCBI Name	`LOC131006074`
原始查询	`LOC131006074`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=28.4; qcov=0.395; evalue=5.37e-11; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=21.2; qcov=0.417; evalue=1.73e-07; confidence=weak
GO	-
KEGG	-
Pfam	PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131006074

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789199.1`
2	Cytoplasm	细胞质	1.00000	`XP_057789199.1`
3	Chromosome	染色体	0.00000	`XP_057789199.1`
4	Centromere	着丝粒	0.00000	`XP_057789199.1`
5	Chromatin	染色质	0.00000	`XP_057789199.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73789577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,B82
`Chr1:73789616`	`G`	`A`	EMS_canonical_SNV	stop_gained	22	A10,A3,B12,B127,B15,B22,B25,B43,B5,B55,B91,B96,C1,C27,C28,C38,C43,C5,C60,C77,C82,D3
`Chr1:73789703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr1:73789710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B80,C86
`Chr1:73789724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:73789733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C60,D11
`Chr1:73789792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:73789805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr1:73789812`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	A3,B115
`Chr1:73789812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B115
`Chr1:73789861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,A11,C22,C63
`Chr1:73789908`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B104,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789199.1

509 aa

254

509

Beta-prop_KIB1-4

FBA_1

FBA_3

PF03478 Beta-prop_KIB1-4 35-96 aa PF07734 FBA_1 210-422 aa PF08268 FBA_3 213-361 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789199.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	35	96	2.6e-09	37.7	KIB1-4 beta-propeller
`XP_057789199.1`	Pfam	`PF07734`	FBA_1	Repeat	210	422	4.7e-19	69.2	F-box associated beta propeller domain
`XP_057789199.1`	Pfam	`PF08268`	FBA_3	Repeat	213	361	5.6e-09	36.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933216.1
TATAACAAAGTTATTTTAGGTATGGACATATCTCAAAAAAAATCGCAAATCAAGCCCCCTGGCTCCGTCCCTGGGCGCCATGGCTGATGCTGCCACCTGCCGTCGATGAAAGCGGTGACCTAGCTTACAGATTCCACTGCCTCGCAACGAAGGAGGAAGTGATTCACAAAAACAAGATATTCAGCGATGAATTGCAATTACCAGCCGAAATCGACGTAATCGACGACGTCGATTTCGTCGGATCATCACACGGTTGGTTA...

CDS

1 records

下载 CDS FASTA

LOC131006074
ATGCTGCCACCTGCCGTCGATGAAAGCGGTGACCTAGCTTACAGATTCCACTGCCTCGCAACGAAGGAGGAAGTGATTCACAAAAACAAGATATTCAGCGATGAATTGCAATTACCAGCCGAAATCGACGTAATCGACGACGTCGATTTCGTCGGATCATCACACGGTTGGTTAGCTTTGTACAATCGGAAAAACACCGATCTGTTTCTCTCAAATCCAATCGTCGATCGACACGTAAAGCTTCCACCTCTCCCCACCGC...

Protein

1 records

下载 Protein FASTA

XP_057789199.1
MLPPAVDESGDLAYRFHCLATKEEVIHKNKIFSDELQLPAEIDVIDDVDFVGSSHGWLALYNRKNTDLFLSNPIVDRHVKLPPLPTADRVILSASDAPLASATFGSRPLPTAPLRRRVDSLRRRPHLRQSGVLDQTQAPLLIQLEPSIHLLPINFFSHVRSTDKKMEDVVFVTRLHGNLNGCQYLKAISLNGDHLDGFFLDMSFMGEFDYVDYIEASYCGGIFCFNTFNGRIALCNPFANTVKFLPPTLPAPPSSYISFY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器