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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005781

染色体: Chr01 坐标: 73921078-73924332 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005781
名称SmilChr01G005781
描述pentatricopeptide repeat-containing protein At1g12620-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向73921078 - 73924332 / -

ID 对照

NCBI Gene IDLOC131006088
GeneID131006088
locus_tag-
NCBI NameLOC131006088
原始查询LOC131006088

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12620-like
产物pentatricopeptide repeat-containing protein At1g12620-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=32.2; qcov=0.926; evalue=9.18e-112; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=32.6; qcov=0.896; evalue=8.3e-105; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131006088

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057789214.1
2 Chloroplast 叶绿体 0.20000 XP_057789214.1
3 Nucleus 细胞核 0.00000 XP_057789214.1
4 Chromosome 染色体 0.00000 XP_057789214.1
5 Centromere 着丝粒 0.00000 XP_057789214.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:73922200 C T EMS_canonical_SNV CDS_variant 2 C52,D10
Chr1:73922204 C T EMS_canonical_SNV CDS_variant 1 B18
Chr1:73922336 C T EMS_canonical_SNV CDS_variant 3 C23,C47,D10
Chr1:73922410 C T EMS_canonical_SNV CDS_variant 5 B101,B13,B2,B79,C48
Chr1:73922430 C T EMS_canonical_SNV CDS_variant 1 B139
Chr1:73922467 C T EMS_canonical_SNV CDS_variant 2 C26,C7
Chr1:73922481 C T EMS_canonical_SNV CDS_variant 2 B140,C34
Chr1:73922497 G A EMS_canonical_SNV CDS_variant 2 B42,B43
Chr1:73922537 G A EMS_canonical_SNV CDS_variant 5 B103,B95,C47,C59,C76
Chr1:73922542 G A EMS_canonical_SNV CDS_variant 4 B118,B68,B94,C44
Chr1:73922640 T TTC 2bp_insertion frameshift_variant 15 A1,A22,B1,B128,B22,B34,B44,B51,B52,B59,B98,C10,C48,C6,C82
Chr1:73922641 CTG C 2bp_deletion frameshift_variant 15 A1,A22,B1,B128,B22,B34,B44,B51,B52,B59,B98,C10,C48,C6,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789214.1
675 aa
N
1
338
675
PPR
PPR_1
PPR
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_3
PPR_1
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR
PPR
C
PF01535 PPR 79-107 aa PF12854 PPR_1 140-171 aa PF01535 PPR 148-174 aa PF01535 PPR 188-212 aa PF13041 PPR_2 188-227 aa PF17177 PPR_long 204-295 aa PF13812 PPR_3 206-264 aa PF12854 PPR_1 213-244 aa PF01535 PPR 218-248 aa PF13041 PPR_2 222-261 aa PF17177 PPR_long 233-337 aa PF13812 PPR_3 242-295 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-282 aa PF23276 TPR_24 254-343 aa PF13812 PPR_3 275-332 aa PF12854 PPR_1 282-314 aa PF01535 PPR 288-318 aa PF13812 PPR_3 309-365 aa PF12854 PPR_1 316-345 aa PF13041 PPR_2 320-369 aa PF23276 TPR_24 321-417 aa PF01535 PPR 324-353 aa PF13812 PPR_3 344-402 aa PF12854 PPR_1 351-383 aa PF13041 PPR_2 356-400 aa PF01535 PPR 359-388 aa PF12854 PPR_1 386-419 aa PF13041 PPR_2 390-436 aa PF01535 PPR 393-423 aa PF13812 PPR_3 414-469 aa PF12854 PPR_1 424-453 aa PF13041 PPR_2 426-472 aa PF01535 PPR 428-457 aa PF17177 PPR_long 438-583 aa PF13041 PPR_2 461-509 aa PF01535 PPR 463-491 aa PF13812 PPR_3 483-540 aa PF12854 PPR_1 492-524 aa PF01535 PPR 498-527 aa PF13041 PPR_2 506-544 aa PF12854 PPR_1 527-556 aa PF13041 PPR_2 530-578 aa PF01535 PPR 533-563 aa PF23276 TPR_24 551-645 aa PF13812 PPR_3 554-611 aa PF01535 PPR 568-598 aa PF01535 PPR 603-633 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789214.1 Pfam PF01535 PPR Repeat 79 107 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 140 171 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF01535 PPR Repeat 148 174 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF01535 PPR Repeat 188 212 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 188 227 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF17177 PPR_long Repeat 204 295 1.3e-40 139.8 Pentacotripeptide-repeat region of PRORP
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 206 264 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 213 244 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF01535 PPR Repeat 218 248 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 222 261 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF17177 PPR_long Repeat 233 337 1.3e-40 139.8 Pentacotripeptide-repeat region of PRORP
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 242 295 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 246 278 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 250 298 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF01535 PPR Repeat 253 282 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF23276 TPR_24 Repeat 254 343 1.3e-40 139.1 Pentatricopeptide repeat-containing protein
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 275 332 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 282 314 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF01535 PPR Repeat 288 318 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 309 365 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 316 345 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 320 369 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF23276 TPR_24 Repeat 321 417 1.3e-40 139.1 Pentatricopeptide repeat-containing protein
XP_057789214.1 Pfam PF01535 PPR Repeat 324 353 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 344 402 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 351 383 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 356 400 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF01535 PPR Repeat 359 388 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 386 419 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 390 436 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF01535 PPR Repeat 393 423 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 414 469 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 424 453 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 426 472 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF01535 PPR Repeat 428 457 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF17177 PPR_long Repeat 438 583 1.3e-40 139.8 Pentacotripeptide-repeat region of PRORP
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 461 509 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF01535 PPR Repeat 463 491 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 483 540 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 492 524 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF01535 PPR Repeat 498 527 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 506 544 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF12854 PPR_1 Repeat 527 556 1.1e-136 444.8 PPR repeat
XP_057789214.1 Pfam PF13041 PPR_2 Repeat 530 578 7.1e-154 500.6 PPR repeat family
XP_057789214.1 Pfam PF01535 PPR Repeat 533 563 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF23276 TPR_24 Repeat 551 645 1.3e-40 139.1 Pentatricopeptide repeat-containing protein
XP_057789214.1 Pfam PF13812 PPR_3 Repeat 554 611 5.6e-75 248.1 Pentatricopeptide repeat domain
XP_057789214.1 Pfam PF01535 PPR Repeat 568 598 1.3e-103 333.0 PPR repeat
XP_057789214.1 Pfam PF01535 PPR Repeat 603 633 1.3e-103 333.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009095415.1
CAAACAACAAAATTCCTAAATCTGATGAAGCAAACAAAGCTCGATCTCCCATTTTTGTTGGTAGGTTTCTCATTTGTTTACCTTTATTCAGATCTAAATCTCGCCGCCGATTAACGATGATGAGCAGAAGAGCTGCTGTTTCTGCAATAAATCTCATTCATGGAAGAGGATTTCTCAATCGGTGGTCGCATAAATCGGGTATTCTTTCTCCTATGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCACA...
XM_057933231.1
CAAACAACAAAATTCCTAAATCTGATGAAGCAAACAAAGCTCGATCTCCCATTTTTGTTGGTAGGTTTCTCATTTGTTTACCTTTATTCAGATCTAAATCTCGCCGCCGATTAACGATGATGAGCAGAAGAGCTGCTGTTTCTGCAATAAATCTCATTCATGGAAGAGGATTTCTCAATCGGTGGTCGCATAAATCGGGTATTCTTTCTCCTATGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCACA...

CDS

1 records

下载 CDS FASTA
LOC131006088
ATGATGAGCAGAAGAGCTGCTGTTTCTGCAATAAATCTCATTCATGGAAGAGGATTTCTCAATCGGTGGTCGCATAAATCGGGTATTCTTTCTCCTATGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCACAATTGATTTCAGTTGTGCTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGATTATGCGGCCGGAGCCTTCTGTTCGCCTCTACAGCAAACTCATGAGTGTTAGTGT...

Protein

1 records

下载 Protein FASTA
XP_057789214.1
MMSRRAAVSAINLIHGRGFLNRWSHKSGILSPMFSLFSSEAFQPKQPTIDFSCAKEVDDVIELFQKIKIMRPEPSVRLYSKLMSVSVKIEQYYFALHVFDEMLRMGVPVCDYTMNIAVNCCCLLKDMYSAFAVMGFFLKRGYEPDVTTFSTLIKGLFLVNKEAEAVKLFEKILDLKLCEPNRLMNLQLIDGLCKAGQAIEAQDWLHRLESSGWSPDVYTYSALIDGFWKGGMVDNAFKVLSKMVGKGILPNVVTYNSMIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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