Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005803`

染色体: Chr01 坐标: 74097096-74099868 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005803`
名称	SmilChr01G005803
描述	vacuolar protein sorting-associated protein 60.1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74097096 - 74099868 / `+`

ID 对照

NCBI Gene ID	`LOC131006111`
GeneID	`131006111`
locus_tag	`-`
NCBI Name	`LOC131006111`
原始查询	`LOC131006111`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 60.1-like
产物	vacuolar protein sorting-associated protein 60.1-like
Arabidopsis	`AT3G10640` (VPS60.1) SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:820233] identity=73.3; qcov=1.11; evalue=2.67e-118; confidence=high
Rice	`Os05g0102900` - identity=71.2; qcov=1.11; evalue=4.75e-118; confidence=high
GO	GO:0005771 (multivesicular body); GO:0006900 (vesicle budding from membrane); GO:0032511 (late endosome to vacuole transport via multivesicular body sorting pathway)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03357 (Snf7)
InterPro	-
eggNOG	-
NR	GeneID:131006111

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789250.1`
2	Cytosol	细胞质基质	1.00000	`XP_057789250.1`
3	Vesicle	囊泡	0.80000	`XP_057789250.1`
4	Nucleus	细胞核	0.60000	`XP_057789250.1`
5	Nucleoplasm	核质	0.60000	`XP_057789250.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74097312`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B38
`Chr1:74097312`	`CA`	`C`	1bp_deletion	CDS_variant	1	B38
`Chr1:74097321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B42,B43,B69,C32,C68
`Chr1:74097610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr1:74097814`	`AGG`	`A`	2bp_deletion	frameshift_variant	14	B17,B38,B50,B52,B7,B78,B84,B85,B9,C26,C27,C36,C40,C45
`Chr1:74097873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,B128
`Chr1:74098660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr1:74098673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B132,C71,C82,D11
`Chr1:74099190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,B132,C71,C82
`Chr1:74099197`	`G`	`GC`	1bp_insertion	frameshift_variant	9	A25,B1,B118,B39,B50,B7,B9,C55,C60
`Chr1:74099198`	`A`	`AGG`	2bp_insertion	frameshift_variant	9	A25,B1,B118,B39,B50,B7,B9,C55,C60
`Chr1:74099199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B133,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789250.1

236 aa

118

236

Snf7

PF03357 Snf7 12-186 aa

XP_057789251.1

212 aa

106

212

Snf7

PF03357 Snf7 12-105 aa PF03357 Snf7 104-162 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789250.1`	Pfam	`PF03357`	Snf7	Family	12	186	8.1e-49	166.3	Snf7
`XP_057789251.1`	Pfam	`PF03357`	Snf7	Family	12	105	8.9e-31	107.6	Snf7
`XP_057789251.1`	Pfam	`PF03357`	Snf7	Family	104	162	8.9e-31	107.6	Snf7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933267.1
TCTTTTCCAAAAAAATATTTATAAGAGGAAATAAATGTTCGATAAGGGACACCATTTCGAAATCACCAAATTGAACCGGAAATAGCAAATTCCCTCTCTCTCCAATTATTTACGCATCCAAAATTTGAAACCCTAGAGTTGAAGGTAACAAAATTGGAAGCAGAGAATCCGGTGGTGAGAATTAGCGATGAAGAGAGTGTTCGGAGCGAAGAAAGACAAGGAACCCCCTCCTTCCGTTCAAGATGCTTCTGATCGGATCA...

XM_057933268.1
CGATAAGGGACACCATTTCGAAATCACCAAATTGAACCGGAAATAGCAAATTCCCTCTCTCTCCAATTATTTACGCATCCAAAATTTGAAACCCTAGAGTTGAAGGTAACAAAATTGGAAGCAGAGAATCCGGTGGTGAGAATTAGCGATGAAGAGAGTGTTCGGAGCGAAGAAAGACAAGGAACCCCCTCCTTCCGTTCAAGATGCTTCTGATCGGATCACTAAAAGAGGCGACAATGTTGAGGAGAAGATAAAGAAAC...

CDS

2 records

下载 CDS FASTA

LOC131006111
ATGAAGAGAGTGTTCGGAGCGAAGAAAGACAAGGAACCCCCTCCTTCCGTTCAAGATGCTTCTGATCGGATCACTAAAAGAGGCGACAATGTTGAGGAGAAGATAAAGAAACTCGATGCTGAATTAGCTAGATACAAGGAGCAGATCAAGAAGACCCGGCCGGGTCCCGCGCAAGAAGCTGTTAAAGCTAGAGCAATGAGAGTGCTAAAGCAGAAACGAATGTATGAAGGGCAACGCGATATGCTGTACAATCAGACATT...

Protein

2 records

下载 Protein FASTA

XP_057789250.1
MKRVFGAKKDKEPPPSVQDASDRITKRGDNVEEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGIKDAQQTMSALKSANKDLKGMMKTVKIDDIDSLQDEMMDLMDVSSEIQESLGRSYNLPDDIDEDELLGELDALEADMGFESEGGMPSYLQPDKESDLDGELSFPSAPTGHAPMPAGRANMQAEDELGLPAVPGPSLRN

XP_057789251.1
MKRVFGAKKDKEPPPSVQDASDRITKRGDNVEEKIKKLDAELARYKEQIKKTRPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGIKDAQQTSLQDEMMDLMDVSSEIQESLGRSYNLPDDIDEDELLGELDALEADMGFESEGGMPSYLQPDKESDLDGELSFPSAPTGHAPMPAGRANMQAEDELGLPAVPGPSLRN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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