Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005833`

染色体: Chr01 坐标: 74340341-74345613 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005833`
名称	SmilChr01G005833
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74340341 - 74345613 / `-`

ID 对照

NCBI Gene ID	`LOC131006132`
GeneID	`131006132`
locus_tag	`-`
NCBI Name	`LOC131006132`
原始查询	`LOC131006132`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=27.7; qcov=0.49; evalue=4.04e-13; confidence=low
Rice	`Os09g0357400` - identity=26.2; qcov=0.687; evalue=3.33e-17; confidence=low
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131006132

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057789278.1`
2	Nucleus	细胞核	0.20000	`XP_057789278.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789280.1`
4	Cell membrane	细胞膜	0.20000	`XP_057789280.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057789281.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74341299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C18,C44
`Chr1:74341364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B98,C6,C60
`Chr1:74341383`	`GCC`	`G`	2bp_deletion	frameshift_variant	2	A5,C37
`Chr1:74341383`	`GCC`	`G`	2bp_deletion	CDS_variant	2	A5,C37
`Chr1:74341751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B80
`Chr1:74341766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr1:74341767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,C1,C60
`Chr1:74341777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B80
`Chr1:74341801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B128,C29,C3,C39
`Chr1:74341838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr1:74341918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B84,B95,C44,C69
`Chr1:74341944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B89,C39

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009095420.1
ATTTCCCATTTCATCACCATATACAAAAAATATATTGGAATTTCCACCAAACTCTGTAAATGGCAATGGCTGCAAGATTGAGTCAAATGATATCTTGCAATTGAAAATCAAGACAAGAAGCTAAGATTCCATCTAAGAGAGGAGAAGAGAAGCTGTTCTGCTTTCATCTACTCTTCTTCTTGCTCACTCCAAATCCCACCTTAAATTCTTCATAGCAACCAGAGAGGAATGACGGCTTATGGTGCAGTGAATTCTCTGAG...

XM_057933297.1
AATATGTGGGCTAAATTTTGGAATTTCCCATTTCATCACCATATACAAAAAATATATTGGAATTTCCACCAAACTCTGTAAATGGCAATGGCTGCAAGATTGAGTCAAATGATATCTTGCAATTGAAAATCAAGACAAGAAGCTAAGATTCCATCTAAGAGAGGAGAAGAGAAGCTGTTCTGCTTTCATCTACTCTTCTTCTTGCTCACTCCAAATCCCACCTTAAATTCTTCATAGCAACCAGAGAGGAATGACGGCTT...

CDS

4 records

下载 CDS FASTA

LOC131006132
ATGAAGAAGAAAGTAAGGAACTACTATGCGAGAAGGTGTTTGGTGAAAATGGTTGCCCTTTTCAACTTGACATCCCAAAATTGCCAAAATTTTGGCAATTTTGGCAAAATTGCCAAGAACTGTGAAGGTCTTCCTCTTATGATAGTCACAGTGGCTGACATCCTATCAAAAGCCCAGAATGCAGACCCCAAATACTGGGATGATGTAGCAGAAATGCGAAATTCAGTCTTCACTGATGCATATAATGAGATATCAAAGGT...

Protein

4 records

下载 Protein FASTA

XP_057789278.1
MKKKVRNYYARRCLVKMVALFNLTSQNCQNFGNFGKIAKNCEGLPLMIVTVADILSKAQNADPKYWDDVAEMRNSVFTDAYNEISKVLFPSYDYLPQYLKMPFLYMGVFPPDYDIPLSKIMNMLATEDWFHNTKKKRSLEDSVWQCLDELCKNKNLVLFNQRSISRTTWMIVNRKFKTCRLHSSWRHVCRGEARKNKFYHVLKKLVEGLEDDVKGQRCLCLENNLLFGIKEFCNSVRLNCASSTRSLLFFGPYHQYPIPV...

XP_057789279.1
MKKKVRNYYARRCLVKMVALFNLTSQNCQNFGNFGKIAKNCEGLPLMIVTVADILSKAQNADPKYWDDVAEMRNSVFTDAYNEISKVLFPSYDYLPQYLKMPFLYMGVFPPDYDIPLSKIMNMLATEDWFHNTKKKRSLEDSVWQCLDELCKNKNLVLFNQRSISRTTWMIVNRKFKTCRLHSSWRHVCRGEARKNKFYHVLKKLVEGLEDDVKGQRCLCLENNLLFGIKEFCNSVRLNCASSTRSLLFFGPYHQYPIPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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