当前解析结果
SmilChr01G005825| 统一新 Gene ID | SmilChr01G005825 |
|---|---|
| 名称 | SmilChr01G005825 |
| 描述 | MDIS1-interacting receptor like kinase 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74250030 - 74251068 / + |
| NCBI Gene ID | LOC131006141 |
|---|---|
| GeneID | 131006141 |
| locus_tag | - |
| NCBI Name | LOC131006141 |
| 原始查询 | LOC131006141 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MDIS1-interacting receptor like kinase 1-like |
| 产物 | MDIS1-interacting receptor like kinase 1-like |
| Arabidopsis | AT4G20270 (BAM3)Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827774] identity=42.8; qcov=1.08; evalue=7.36e-28; confidence=medium |
| Rice | Os11g0233800 (OsRLCK320)- identity=42.3; qcov=1.06; evalue=4.58e-29; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006141 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789293.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057789293.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057789293.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789293.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789293.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74250173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B126,B140 |
Chr1:74250201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,C65 |
Chr1:74250210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr1:74250221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C75 |
Chr1:74250232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B53 |
Chr1:74250258 |
TG |
T |
1bp_deletion | frameshift_variant | 5 | A10,B106,B16,B47,C44 |
Chr1:74250258 |
TG |
T |
1bp_deletion | CDS_variant | 5 | A10,B106,B16,B47,C44 |
Chr1:74250261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:74250324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B85,B92,D2,D9 |
Chr1:74250357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B28 |
Chr1:74250373 |
CAA |
C |
2bp_deletion | frameshift_variant | 1 | C78 |
Chr1:74250373 |
CAA |
C |
2bp_deletion | CDS_variant | 1 | C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789293.1PF00560
LRR_1 4-23 aa
PF00560
LRR_1 29-50 aa
PF13855
LRR_8 29-89 aa
PF23598
LRR_14 53-134 aa
PF00560
LRR_1 54-76 aa
PF12799
LRR_4 54-90 aa
PF00560
LRR_1 78-100 aa
PF12799
LRR_4 78-113 aa
PF00560
LRR_1 102-124 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789293.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 4 | 23 | 5.8e-23 | 76.7 | Leucine Rich Repeat |
XP_057789293.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 29 | 50 | 5.8e-23 | 76.7 | Leucine Rich Repeat |
XP_057789293.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 29 | 89 | 1.7e-14 | 54.0 | Leucine rich repeat |
XP_057789293.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 53 | 134 | 5.4e-15 | 55.7 | Leucine-rich repeat region |
XP_057789293.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 54 | 76 | 5.8e-23 | 76.7 | Leucine Rich Repeat |
XP_057789293.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 54 | 90 | 1e-18 | 67.6 | Leucine Rich repeats (2 copies) |
XP_057789293.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 78 | 100 | 5.8e-23 | 76.7 | Leucine Rich Repeat |
XP_057789293.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 78 | 113 | 1e-18 | 67.6 | Leucine Rich repeats (2 copies) |
XP_057789293.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 102 | 124 | 5.8e-23 | 76.7 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。