Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005843`

染色体: Chr01 坐标: 74416401-74420622 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005843`
名称	SmilChr01G005843
描述	disease resistance protein RPP13-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74416401 - 74420622 / `-`

ID 对照

NCBI Gene ID	`LOC131006144`
GeneID	`131006144`
locus_tag	`-`
NCBI Name	`LOC131006144`
原始查询	`LOC131006144`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein RPP13-like
产物	disease resistance protein RPP13-like
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=30.3; qcov=0.619; evalue=6.72e-21; confidence=low
Rice	`Os06g0146100` (Pi9(t)) - identity=31.8; qcov=0.37; evalue=6.64e-14; confidence=low
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding); GO:0050832 (defense response to fungus)
KEGG	-
Pfam	PF00931 (NB-ARC)
InterPro	-
eggNOG	-
NR	GeneID:131006144

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057789294.1`
2	Cell membrane	细胞膜	0.60000	`XP_057789295.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789294.1`
4	Nucleus	细胞核	0.20000	`XP_057789295.1`
5	Chromosome	染色体	0.00000	`XP_057789294.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74417514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B35,B38,B39,B78
`Chr1:74417521`	`AGT`	`A`	2bp_deletion	frameshift_variant	137	A11,A14,A16,A19,A2,A20,A21,A22,A23,A3,A5,A6,A7,A9,B1,B101,B103,B104,B106,B110,B112,B113,B114,B117,B118,B12,B120,B122,B123,B13,B130,B134,B135,B136,B137,B138,B139,B14,B140,B15,B18,B2,B22,B25,B27,B30,B33,B35,B36,B38,B39,B4,B40,B42,B43,B44,B47,B48,B52,B54,B55,B6,B61,B64,B68,B7,B73,B75,B76,B77,B78,B79,B81,B82,B85,B86,B87,B88,B89,B9,B91,B93,B95,C11,C14,C15,C16,C17,C18,C20,C21,C23,C24,C25,C27,C28,C30,C31,C35,C36,C38,C4,C41,C43,C46,C47,C48,C51,C52,C53,C55,C57,C59,C6,C60,C61,C63,C64,C66,C69,C70,C71,C72,C73,C74,C76,C77,C80,C81,C84,C85,C86,C9,D1,D11,D8,D9
`Chr1:74417525`	`A`	`AAG`	2bp_insertion	frameshift_variant	138	A11,A14,A16,A19,A2,A20,A21,A22,A23,A3,A5,A6,A7,A9,B1,B101,B103,B104,B106,B110,B112,B113,B114,B117,B118,B12,B120,B122,B123,B128,B13,B130,B134,B135,B136,B137,B138,B139,B14,B140,B15,B18,B2,B25,B27,B30,B33,B35,B36,B38,B39,B4,B40,B42,B43,B44,B47,B48,B52,B54,B55,B6,B61,B64,B68,B7,B73,B75,B76,B77,B78,B79,B81,B82,B85,B86,B87,B88,B89,B9,B91,B93,B95,C11,C14,C15,C16,C17,C18,C20,C21,C23,C24,C25,C27,C28,C30,C31,C35,C36,C38,C4,C41,C43,C46,C47,C48,C51,C52,C53,C55,C57,C59,C6,C60,C61,C63,C64,C66,C69,C70,C71,C72,C73,C74,C76,C77,C79,C80,C81,C84,C85,C86,C9,D1,D11,D8,D9
`Chr1:74417532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B91,C24,C6
`Chr1:74417546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B39,B78
`Chr1:74417549`	`GCA`	`G`	2bp_deletion	frameshift_variant	3	B139,B39,B78
`Chr1:74417549`	`GCA`	`G`	2bp_deletion	CDS_variant	3	B139,B39,B78
`Chr1:74417558`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B113
`Chr1:74417558`	`CTT`	`C`	2bp_deletion	CDS_variant	1	B113
`Chr1:74417575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,C60
`Chr1:74417616`	`T`	`TC`	1bp_insertion	frameshift_variant	23	A6,B101,B13,B15,B30,B33,B38,B40,B43,B49,B70,B76,B88,B91,C16,C25,C41,C43,C48,C53,C6,C69,C71
`Chr1:74417618`	`TC`	`T`	1bp_deletion	frameshift_variant	22	A6,B101,B13,B15,B30,B33,B38,B40,B43,B49,B70,B76,B88,B91,C16,C25,C41,C43,C48,C53,C6,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789295.1

341 aa

170

341

NB-ARC

PF00931 NB-ARC 215-334 aa

XP_057789296.1

341 aa

170

341

NB-ARC

PF00931 NB-ARC 215-334 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789295.1`	Pfam	`PF00931`	NB-ARC	Domain	215	334	2.3e-19	70.3	NB-ARC domain
`XP_057789296.1`	Pfam	`PF00931`	NB-ARC	Domain	215	334	2.3e-19	70.3	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933313.1
AAATTGCATGTGGGCCTATATTGGAATTTCCCCATTTCATCACCATCTACAAAAATCATAAGCTAGTCACTGTAACTAGCAAATTATCTGATTTCCACCAAAATCTGCAAATGGCAATGGCTGCAAGATTGAGTCAAGTAATTTCTTGCAATTGAAAGTCAAGACAAGAAGCTAAGAGAGGAGAAGAGAAGTTGTCTGCTTTGATCTACTCTTCTTCTTGCTCACTCCAAAACCGACCTAAATTCTTCACAGCAACCGAA...

XM_057933311.1
TCACCATCTACAAAAATCATAAGCTAGTCACTGTAACTAGCAAATTATCTGATTTCCACCAAAATCTGCAAATGGCAATGGCTGCAAGATTGAGTCAAGTAATTTCTTGCAATTGAAAGTCAAGACAAGAAGCTAAGAGAGGAGAAGAGAAGTTGTCTGCTTTGATCTACTCTTCTTCTTGCTCACTCCAAAACCGACCTAAATTCTTCACAGCAACCGAAATTCTTCGAGGAATGACGGCATATGCTGCAGTGAATTCT...

CDS

3 records

下载 CDS FASTA

LOC131006144
ATGAACGAAGTAGAAAGTAAGGAGTTACTATGTGAGAAGGTGTTTGGTGAAAAGGATTGCCCTTTTCAACTTGACAAAGCTATTACCAAAATTGCCAAGAATTGTGAAGGTCTTCCTCTCATGATAGTTACAGTGGCTGACATCCTATCAAAATCCCATAATACAGACCCAAAATACTGGGACGATGTAGCAGAAATGAGGAATTCAGTCTTCACGGATGCATATGATGAGATATCAAAGGTACTTTTCCCAAGTTACGA...

LOC131006144
ATGACGGCATATGCTGCAGTGAATTCTCTGAGGAATACAATTGATTACATTCTCCATTCTTCTCATTTTAGCCTCGTTGATCCCTCTCCACATATCATACAACTCGCCTACGATAAGTTGGATCCATTGCAAGAAATTCTAGAAGGATTGGACAGGACAAGGACAAGCAAGAGCAGGAAGAAGGTGAATGGTTTGGATGGAAGAATCAAAGAGTTGATTTGGGAATTCCAACACTTATTGGAATCCCTCCTCTACCAACA...

Protein

3 records

下载 Protein FASTA

XP_057789294.1
MNEVESKELLCEKVFGEKDCPFQLDKAITKIAKNCEGLPLMIVTVADILSKSHNTDPKYWDDVAEMRNSVFTDAYDEISKVLFPSYDYLPQYLKMPFLYMGVFPPDYDIPRSKLVYMLATEGWFHNTNKRQSLDNSVWECLNELCTVKNLVLFDKRSVFKSSWIDSYRKFKTCRLHSSWRHVCRGEARKNKFYYVLKKLVEGLEDDVKGQRCLCLENNILFGIKDFCDSVRSNCASSTRSLLFLGPYHQYPIPLGDNFKL...

XP_057789295.1
MTAYAAVNSLRNTIDYILHSSHFSLVDPSPHIIQLAYDKLDPLQEILEGLDRTRTSKSRKKVNGLDGRIKELIWEFQHLLESLLYQQIHSQIRADQVDDEMTERVWEFGCLLESLPSQPQILRNFNTPRILNESQAEDDVGGERIRFSIDLHCIEDDVGSFMERLKDMEREYIYEVDNMLEDDDDEDDQSISTRSGTKSKMIGLSDQFQLLKRGLMQFDYDKNNYITLDGAAGLGKTALAEAVFEDPEILSHFEYRAWVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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