当前解析结果
SmilChr01G005856| 统一新 Gene ID | SmilChr01G005856 |
|---|---|
| 名称 | SmilChr01G005856 |
| 描述 | uncharacterized SmilChr01G005856 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74491666 - 74497993 / + |
| NCBI Gene ID | LOC131006158 |
|---|---|
| GeneID | 131006158 |
| locus_tag | - |
| NCBI Name | LOC131006158 |
| 原始查询 | LOC131006158 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0136500; species=rice; confidence=high |
| 产物 | hit=Os11g0136500; species=rice; confidence=high |
| Arabidopsis | AT3G11470 (AT3G11470)4'-phosphopantetheinyl transferase superfamily [Source:NCBI gene (formerly Entrezgene);Acc:820320] identity=24.4; qcov=0.589; evalue=3.73e-06; confidence=weak |
| Rice | Os11g0136500- identity=53.8; qcov=0.911; evalue=7.01e-101; confidence=high |
| GO | GO:0000287 (magnesium ion binding); GO:0005829 (cytosol); GO:0008897 (holo-[acyl-carrier-protein] synthase activity); GO:0019878 (GO:0019878) |
| KEGG | smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01648 (ACPS); PF22624 (AASDHPPT_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006158 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789314.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057789314.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789314.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789314.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789314.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74495407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,A20,B105 |
Chr1:74496165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C32,C68,C78 |
Chr1:74496448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:74496498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:74496562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr1:74496573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:74496655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:74497834 |
A |
ATC |
2bp_insertion | frameshift_variant | 17 | A13,A16,B120,B35,B36,B46,B51,B52,B55,B66,C14,C23,C27,C5,C51,C73,C86 |
Chr1:74497846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B31,B48,D5,D6 |
Chr1:74497854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C46 |
Chr1:74497872 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 172 | A1,A10,A14,A15,A16,A18,A19,A2,A20,A21,A23,A24,A25,A3,A5,A7,A8,B1,B101,B102,B103,B105,B106,B107,B108,B109,B112,B113,B114,B117,B118,B119,B12,B120,B122,B123,B124,B125,B127,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B138,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B24,B25,B26,B27,B28,B29,B3,B30,B31,B34,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B55,B56,B6,B61,B64,B67,B68,B69,B70,B72,B75,B77,B81,B82,B84,B85,B86,B88,B90,B92,B93,B94,B95,B96,C1,C11,C13,C14,C16,C18,C20,C22,C24,C26,C27,C30,C31,C32,C33,C34,C37,C38,C39,C40,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C57,C58,C59,C61,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C79,C8,C80,C82,C86,C87,D2,D3,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789314.1PF22624
AASDHPPT_N 16-114 aa
PF01648
ACPS 118-227 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789314.1 |
Pfam | PF22624 |
AASDHPPT_N | Domain | 16 | 114 | 7.8e-37 | 126.2 | 4'-phosphopantetheinyl transferase, N-terminal |
XP_057789314.1 |
Pfam | PF01648 |
ACPS | Domain | 118 | 227 | 5e-17 | 62.7 | 4'-phosphopantetheinyl transferase superfamily |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。