当前解析结果
SmilChr01G005865| 统一新 Gene ID | SmilChr01G005865 |
|---|---|
| 名称 | SmilChr01G005865 |
| 描述 | receptor-like protein 33 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74591958 - 74594630 / - |
| NCBI Gene ID | LOC131006168 |
|---|---|
| GeneID | 131006168 |
| locus_tag | - |
| NCBI Name | LOC131006168 |
| 原始查询 | LOC131006168 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 33 |
| 产物 | receptor-like protein 33 |
| Arabidopsis | AT2G33060 (RLP27)receptor like protein 27 [Source:NCBI gene (formerly Entrezgene);Acc:817868] identity=41.8; qcov=0.918; evalue=1.75e-91; confidence=medium |
| Rice | Os12g0222800- identity=42.9; qcov=0.932; evalue=1.11e-89; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006168 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789329.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789329.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789329.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789329.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789329.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74592116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C8 |
Chr1:74592162 |
T |
TA |
1bp_insertion | frameshift_variant | 3 | B110,B66,C8 |
Chr1:74592162 |
T |
TA |
1bp_insertion | CDS_variant | 3 | B110,B66,C8 |
Chr1:74592164 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C42 |
Chr1:74592164 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C42 |
Chr1:74592168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B66,C8 |
Chr1:74592213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B35,B43,B73,B93 |
Chr1:74592218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B46,B66,C13 |
Chr1:74592291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:74592325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,C71 |
Chr1:74592359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,C44,D2 |
Chr1:74592362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789329.1PF00560
LRR_1 4-25 aa
PF00560
LRR_1 28-49 aa
PF00560
LRR_1 77-98 aa
PF00560
LRR_1 151-168 aa
PF00560
LRR_1 217-237 aa
PF13855
LRR_8 217-274 aa
PF00560
LRR_1 240-261 aa
PF00560
LRR_1 264-285 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 4 | 25 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 28 | 49 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 77 | 98 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 151 | 168 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 237 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
XP_057789329.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 217 | 274 | 4.9e-23 | 81.4 | Leucine rich repeat |
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 240 | 261 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
XP_057789329.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 264 | 285 | 1.3e-30 | 99.6 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。