当前解析结果
SmilChr01G005878| 统一新 Gene ID | SmilChr01G005878 |
|---|---|
| 名称 | SmilChr01G005878 |
| 描述 | wall-associated receptor kinase-like 22 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 74721717 - 74724248 / - |
| NCBI Gene ID | LOC131006174 |
|---|---|
| GeneID | 131006174 |
| locus_tag | - |
| NCBI Name | LOC131006174 |
| 原始查询 | LOC131006174 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 22 |
| 产物 | wall-associated receptor kinase-like 22 |
| Arabidopsis | AT1G16130 (WAKL2)wall associated kinase-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:838182] identity=36.4; qcov=0.473; evalue=1.01e-17; confidence=low |
| Rice | Os04g0598900 (OsWAK50)- identity=32.8; qcov=0.613; evalue=2.29e-20; confidence=low |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006174 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057789333.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057789333.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057789333.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789333.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789333.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:74721722 |
T |
TA |
1bp_insertion | frameshift_variant | 8 | A16,B114,B34,B63,B64,C39,C7,C86 |
Chr1:74721803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,B82 |
Chr1:74721812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:74721825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C34 |
Chr1:74721892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr1:74721897 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,D10 |
Chr1:74721955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:74721967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr1:74721981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:74722028 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | A19,C59 |
Chr1:74722028 |
TG |
T |
1bp_deletion | CDS_variant | 2 | A19,C59 |
Chr1:74722113 |
G |
GA |
1bp_insertion | frameshift_variant | 180 | A1,A10,A13,A14,A16,A18,A19,A2,A21,A23,A24,A25,A6,A7,B100,B102,B103,B106,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B124,B126,B128,B13,B131,B132,B133,B135,B136,B137,B138,B14,B15,B16,B17,B19,B2,B20,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B34,B35,B36,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B48,B49,B5,B52,B53,B54,B56,B57,B59,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B76,B79,B8,B80,B82,B84,B85,B86,B87,B89,B91,B93,B95,B96,B97,B98,C15,C16,C17,C2,C20,C21,C26,C27,C29,C3,C30,C35,C36,C39,C40,C41,C42,C44,C45,C46,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C59,C6,C61,C64,C65,C66,C69,C7,C70,C71,C72,C73,C75,C76,C77,C79,C8,C80,C81,C82,C83,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。